Browse Element(s) Details


Os.31693.3.S1_at

Description gb:AK121420.1
DB_XREF= gi:37991043
TID=Os.31693.3
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0019E03.4 (P0019E03.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133L11, full insert sequence.
FL= gb:AK121420.1 gb:AK100939.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g488309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48800Os.29907.1.S1_at11/111+28322809..28324394expressed protein
LOC_Os01g48810Os.38817.1.S1_at11/111+28335879..28338709expressed protein
LOC_Os01g48810Os.38817.2.S1_x_at9/111+28335879..28338709expressed protein
LOC_Os01g48810Os.52100.1.S1_at1/111+28335879..28338709expressed protein
LOC_Os01g48820Os.21192.2.S1_at10/111+28339527..28340797expressed protein
LOC_Os01g48820Os.21192.3.S1_x_at9/111+28339527..28340797expressed protein
LOC_Os01g48830Os.31693.2.S1_at11/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.4.S1_x_at10/111+28343118..28348261expressed protein
LOC_Os01g48830Os.31693.3.S1_at9/111+28343118..28348261expressed protein
LOC_Os01g48840OsAffx.11523.1.S1_at11/111+28354377..28355274hypothetical protein
LOC_Os01g48850Os.34998.1.S1_x_at10/111+28355641..28358553auxin-responsive protein, putative, expressed
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31693.3.S1_at--794--11Chr01:28343577..28343601 (25 bp)
ATTGGGCCATTGCAATCAAAGTGGA
LOC_Os01g48830
Os.31693.3.S1_at--946--1031Chr01:28343448..28343472 (25 bp)
AGGTGCACGCGTAACGCGTTTGCCT
LOC_Os01g48830
Os.31693.3.S1_at--732--7871Chr01:28343327..28343351 (25 bp)
GGTTTTGTCAGAGCCGGCCACCTGC
LOC_Os01g48830
Os.31693.3.S1_at--552--8391Chr01:28343285..28343309 (25 bp)
GGCGCACAACTTGGTGCCGCGTTTT
LOC_Os01g48830
Os.31693.3.S1_at--267--10391Chr01:28343263..28343287 (25 bp)
TTTTCTCCCCGCGAGAGGCCATTTT
LOC_Os01g48830
Os.31693.3.S1_at--477--6111Chr01:28343249..28343273 (25 bp)
GAGGCCATTTTGTGGTGTAATTTTT
LOC_Os01g48830
Os.31693.3.S1_at--557--9271Chr01:28343190..28343214 (25 bp)
TCCTGTGAGCTTTTGCGGTTTGGTT
LOC_Os01g48830
Os.31693.3.S1_at--175--5171Chr01:28343163..28343187 (25 bp)
GTTGGAATGGTTACCCGGTGACTCT
LOC_Os01g48830
Os.31693.3.S1_at--708--3971Chr01:28343148..28343172 (25 bp)
CGGTGACTCTTGTGCATAGTTCTTT
LOC_Os01g48830
Os.31693.3.S1_at--354--10551NONE
TTCTCCCATTTCATTTCACCGTTTG
NONE
Os.31693.3.S1_at--525--10551NONE
TTCATTTCACCGTTTGGGCCAAAGT
NONE
Target Sequence 
ATTGGGCCATTGCAATCAAAGTGGATGGGGGGAGAAGAAGTAAGGGCAAGCCAAAGGGAAGGCGAAGGCGAAGAGTGTTT
TTTGTGTAAATGGAGAGGAAAAAGAAGAGGAGGATGTGCCGAGGGCAGGAGGTGCACGCGTAACGCGTTTGCCTCACACA
CCCTCCTCGAGGCGCCCGGCCCAGCGGAAGTGGTGGCTTGAGACGACGACGACGACTATGCCCCGGGGTGAATTTTTTTC
GTTTCTTTCGGGTTTTGTCAGAGCCGGCCACCTGCTCGCACGTCGTCGCAGCGGCGCACAACTTGGTGCCGCGTTTTTCT
CCCCGCGAGAGGCCATTTTGTGGTGTAATTTTTTGGGTGGGCTCCGTTGGCCCGGCCGGCCTCGCCTTCCTGTGAGCTTT
TGCGGTTTGGTTTGGTTGGAATGGTTACCCGGTGACTCTTGTGCATAGTTCTTTACTATTAGTACNNNNNTNCCATTTTT
TTTCTTCTTCTTTCTCCCATTTCATTTCACCGTTTGGGCCAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31693.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis