Browse Element(s) Details


Os.24872.2.S1_at

Description gb:NM_192054.1
DB_XREF= gi:34911191
GEN=P0019E03.12
TID=Os.24872.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24872 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative beclin 1 (P0019E03.12), mRNA.
PROD=putative beclin 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g489203/11Autophagy protein Apg6 containing protein, expressed
LOC_Os03g152901/11Autophagy protein Apg6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48900Os.41711.1.S1_at11/111+28382038..28387289Dynamin-related protein 1A, putative, expressed
LOC_Os01g48910Os.22710.1.S1_a_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48910Os.22710.2.S1_x_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48920Os.24872.1.S1_at11/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48920Os.24872.2.S1_at3/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48930Os.10135.1.S1_at11/111+28407240..28410229expressed protein
LOC_Os01g48940OsAffx.23719.1.S1_at11/111+28411109..28413257expressed protein
LOC_Os01g48940Os.46029.1.A1_at11/111+28411109..28413257expressed protein
LOC_Os01g48950Os.35583.1.S1_at10/111+28415247..28415951expressed protein
LOC_Os01g48960Os.12738.1.S1_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48960Os.12738.1.S2_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24872.2.S1_at--1070--3631NONE
CTTCCTAATGTACAGCACTGCAGTT
NONE
Os.24872.2.S1_at--623--7031Chr01:28398607..28398627 (21 bp)
GTACAGCACTGCAGTTATATCATGC
LOC_Os01g48920
Os.24872.2.S1_at--404--5032Chr03:8349749..8349769 (21 bp)
GCAGTTATATCATGCTAACCAGGTT
LOC_Os03g15290
Os.24872.2.S1_at--813--9031Chr01:28398585..28398609 (25 bp)
TGCTAACCAGGTTTGGTCCCGTGAA
LOC_Os01g48920
Os.24872.2.S1_at--1056--1711NONE
ACCATCTGGATCTTTCCAATGCTAC
NONE
Os.24872.2.S1_at--172--7971NONE
GGATCTTTCCAATGCTACGTACAAA
NONE
Os.24872.2.S1_at--63--4832Chr10:21539714..21539734 (21 bp)
GCTACGTACAAAACCATTTCCTTCT
NONE
Os.24872.2.S1_at--177--3591Chr01:28397147..28397171 (25 bp)
CATTTCCTTCTAACTAACTTCGACG
NONE
Os.24872.2.S1_at--583--9811Chr01:28397133..28397157 (25 bp)
TAACTTCGACGCCACCATTAATATC
NONE
Os.24872.2.S1_at--773--4411Chr01:28397123..28397147 (25 bp)
GCCACCATTAATATCACCCGTAGTT
NONE
Os.24872.2.S1_at--226--4312Chr07:10547855..10547926 (24 bp)
CCATTAATATCACCCGTAGTTCCAA
NONE
Target Sequence 
CTTCCTAATGTACAGCACTGCAGTTATATCATGCTAACCAGGTTTGGTCCCGTGAATTTATTCTGGAGCACACGTTTTGA
CAAAGCCATGACATGGTTTCTAACCTGCCTGCAAGATTTTGCTGAGTTCGCTATTAGCTTGGATAAAGAGAACAATGTAC
CACCTGAGAAGTCATTAAAGCTCCCATACAAGATTGATGGTGACAAGGTAGGGAGCCACACAATCTTCTTAAGTTTTAAT
AAAGTGGAGAACTGGACGAAAGCACTAAAATACACGCTGTGCAACTTGAAGTGGGTCCTCTACTGGTTTATCGGCAATAC
GAGTTTCGCACCACCATCTGGATCTTTCCAATGCTACGTACAAAACCATTTCCTTCTAACTAACTTCGACGCCACCATTA
ATATCACCCGTAGTTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24872.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis