Browse Element(s) Details


Os.22710.2.S1_x_at

Description gb:NM_192053.1
DB_XREF= gi:34911189
GEN=P0019E03.11
TID=Os.22710.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.22710 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative acyl-CoA synthetase (P0019E03.11), mRNA.
PROD=putative acyl-CoA synthetase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4891011/11AMP-binding enzyme family protein, expressed
LOC_Os05g041701/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48900Os.41711.1.S1_at11/111+28382038..28387289Dynamin-related protein 1A, putative, expressed
LOC_Os01g48910Os.22710.1.S1_a_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48910Os.22710.2.S1_x_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48920Os.24872.1.S1_at11/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48920Os.24872.2.S1_at3/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48930Os.10135.1.S1_at11/111+28407240..28410229expressed protein
LOC_Os01g48940OsAffx.23719.1.S1_at11/111+28411109..28413257expressed protein
LOC_Os01g48940Os.46029.1.A1_at11/111+28411109..28413257expressed protein
LOC_Os01g48950Os.35583.1.S1_at10/111+28415247..28415951expressed protein
LOC_Os01g48960Os.12738.1.S1_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48960Os.12738.1.S2_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0010143biological_processcutin biosynthesis
GO:0004467molecular_functionlong-chain-fatty-acid-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22710.2.S1_x_at--334--7631Chr01:28389990..28390014 (25 bp)
GGGACACCTTGTTCTCAGGGTACCA
LOC_Os01g48910
Os.22710.2.S1_x_at--735--6232Chr05:1846190..1846209 (20 bp)
GATGGATGGTTTCACACAGGAGACA
LOC_Os05g04170
Os.22710.2.S1_x_at--230--2511Chr01:28389655..28389679 (25 bp)
AACATCTTCAAGCTCTCCCAAGGAG
LOC_Os01g48910
Os.22710.2.S1_x_at--543--5491Chr01:28389605..28389629 (25 bp)
GAACATATTCGGTCAAGCTCCTGGT
LOC_Os01g48910
Os.22710.2.S1_x_at--754--2691Chr01:28389478..28389615 (25 bp)
AAGCTCCTGGTGTTGATTCGATTTG
LOC_Os01g48910
Os.22710.2.S1_x_at--1056--3051Chr01:28389433..28389457 (25 bp)
AATCATGCTTGGTTGCAGTGGTCAA
LOC_Os01g48910
Os.22710.2.S1_x_at--1055--7491Chr01:28389416..28389440 (25 bp)
GTGGTCAACCCGAACAAGCAAGCTC
LOC_Os01g48910
Os.22710.2.S1_x_at--49--8071Chr01:28389359..28389383 (25 bp)
GGAGACTTTGCTACCATGTGTGAAG
LOC_Os01g48910
Os.22710.2.S1_x_at--119--10271Chr01:28389179..28389203 (25 bp)
TTTGAGCTCATCAGGGCTGTTCATC
LOC_Os01g48910
Os.22710.2.S1_x_at--82--8571Chr01:28389133..28389157 (25 bp)
TGGATCGTGACCTAATTACCCCAAC
LOC_Os01g48910
Os.22710.2.S1_x_at--83--1631Chr01:28389097..28389121 (25 bp)
AGCGGCCACAGCTGCTCAAATATTA
LOC_Os01g48910
Target Sequence 
GGGACACCTTGTTCTCAGGGTACCACAAACGAGAAGACCTCACCAAGGAAGTTTTAGTCGATGGATGGTTTCACACAGGA
GACATTGGTGAGTGGCAGTCTGATGGAAGCATGAAGATCATTGATCGCAAGAAGAACATCTTCAAGCTCTCCCAAGGAGA
ATATGTCGCTGTGGAGAATTTGGAGAACATATTCGGTCAAGCTCCTGGTGTTGATTCGATTTGGGTGTACGGGAATAGCT
TCGAATCATGCTTGGTTGCAGTGGTCAACCCGAACAAGCAAGCTCTGGAACGATGGGCAGAGTCAAACGGGGTAACTGGA
GACTTTGCTACCATGTGTGAAGATCCTAAAGCAAAAGAATTTATCTTGGGAGAATTAACCAAGACTGGTAAAGAAAAGAA
GCTCAAAGGCTTTGAGCTCATCAGGGCTGTTCATCTGGAGCCAGTGCCATTCGATATGGATCGTGACCTAATTACCCCAA
CTTACAAGAAGAAGCGGCCACAGCTGCTCAAATATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22710.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis