Browse Element(s) Details


OsAffx.23719.1.S1_at

Description tigr:9629.m04721
TID=OsAffx.23719.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4894011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48900Os.41711.1.S1_at11/111+28382038..28387289Dynamin-related protein 1A, putative, expressed
LOC_Os01g48910Os.22710.1.S1_a_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48910Os.22710.2.S1_x_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48920Os.24872.1.S1_at11/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48920Os.24872.2.S1_at3/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48930Os.10135.1.S1_at11/111+28407240..28410229expressed protein
LOC_Os01g48940OsAffx.23719.1.S1_at11/111+28411109..28413257expressed protein
LOC_Os01g48940Os.46029.1.A1_at11/111+28411109..28413257expressed protein
LOC_Os01g48950Os.35583.1.S1_at10/111+28415247..28415951expressed protein
LOC_Os01g48960Os.12738.1.S1_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48960Os.12738.1.S2_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48970OsAffx.23720.1.S1_at10/111+28436506..28440607hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23719.1.S1_at--751--7531Chr01:28411853..28411877 (25 bp)
GTGGCATCCGTTTTGGCGTGGAAAA
LOC_Os01g48940
OsAffx.23719.1.S1_at--604--1871Chr01:28411794..28411818 (25 bp)
ACGAGTGTACGTGGTGCTTTGCCCA
LOC_Os01g48940
OsAffx.23719.1.S1_at--505--9931Chr01:28411787..28411811 (25 bp)
TACGTGGTGCTTTGCCCACTTGAAA
LOC_Os01g48940
OsAffx.23719.1.S1_at--241--10691Chr01:28411776..28411800 (25 bp)
TTGCCCACTTGAAAACAGCAGTTAA
LOC_Os01g48940
OsAffx.23719.1.S1_at--626--4871Chr01:28411759..28411783 (25 bp)
GCAGTTAAAACTTTGGCATCCGGAG
LOC_Os01g48940
OsAffx.23719.1.S1_at--424--8491Chr01:28411746..28411770 (25 bp)
TGGCATCCGGAGTTCTTATCTCCCT
LOC_Os01g48940
OsAffx.23719.1.S1_at--458--8991Chr01:28411716..28411740 (25 bp)
TGAAGCCGCCGCTATCAAGGGCGTC
LOC_Os01g48940
OsAffx.23719.1.S1_at--1080--2871Chr01:28411700..28411724 (25 bp)
AAGGGCGTCGCAATTACCGACTTGT
LOC_Os01g48940
OsAffx.23719.1.S1_at--1102--10431Chr01:28411687..28411711 (25 bp)
TTACCGACTTGTTCAAAGTTTATCG
LOC_Os01g48940
OsAffx.23719.1.S1_at--634--9051Chr01:28411173..28411197 (25 bp)
TGCATTTGACGGTTGATGATGTCTT
LOC_Os01g48940
OsAffx.23719.1.S1_at--20--6271Chr01:28411156..28411180 (25 bp)
GATGTCTTCTTAAGGGTTAGCGTGA
LOC_Os01g48940
Target Sequence 
GTGGCATCCGTTTTGGCGTGGAAAACGAAGGACAGCTGGGGACAACGAGAGCGACGGCGACGAGTGTACGTGGTGCTTTG
CCCACTTGAAAACAGCAGTTAAAACTTTGGCATCCGGAGTTCTTATCTCCCTCCCTCTGAAGCCGCCGCTATCAAGGGCG
TCGCAATTACCGACTTGTTCAAAGTTTATCGGGAAAAACATCATCAAAATGCATTTGACGGTTGATGATGTCTTCTTAAG
GGTTAGCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis