Browse Element(s) Details


Os.7712.1.S1_a_at

Description gb:AK068815.1
DB_XREF= gi:32978840
TID=Os.7712.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.7712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0019E03.19 (P0019E03.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158I10, full insert sequence.
FL= gb:AK104091.1 gb:AK068815.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4899011/11Kinase C630.09c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48960Os.12738.1.S1_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48960Os.12738.1.S2_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48970OsAffx.23720.1.S1_at10/111+28436506..28440607hypothetical protein
LOC_Os01g48980Os.17811.1.S1_at11/111+28444944..28450141GPI transamidase component family protein, putative, expressed
LOC_Os01g48990Os.7712.1.S1_a_at11/111+28453423..28457125Kinase C630.09c, putative, expressed
LOC_Os01g49000Os.26940.1.S1_at11/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed
LOC_Os01g49000Os.52574.2.S1_x_at1/111+28463215..28470187Katanin p60 ATPase-containing subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009853biological_processphotorespiration
GO:0009507cellular_componentchloroplast
GO:0008887molecular_functionglycerate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7712.1.S1_a_at--643--9771Chr01:28456016..28456040 (25 bp)
TAAGAACCTTGAGGCATACTACGAT
LOC_Os01g48990
Os.7712.1.S1_a_at--1026--9891Chr01:28456032..28456056 (25 bp)
TACTACGATGCATGGGACAGGTTCA
LOC_Os01g48990
Os.7712.1.S1_a_at--1095--6731Chr01:28456052..28456076 (25 bp)
GTTCATTGGGTCATGGATGGTCATA
LOC_Os01g48990
Os.7712.1.S1_a_at--230--951Chr01:28456084..28456108 (25 bp)
AGGAACCTAGTTGCGTGTACCAGTG
LOC_Os01g48990
Os.7712.1.S1_a_at--720--8751Chr01:28456099..28456119 (21 bp)
TGTACCAGTGGAGACTGCAGGCAGA
LOC_Os01g48990
Os.7712.1.S1_a_at--668--1551Chr01:28456215..28456239 (25 bp)
AGCTATGAGAGCAGATGGGAAACCA
LOC_Os01g48990
Os.7712.1.S1_a_at--92--1031Chr01:28456763..28456787 (25 bp)
AGGTCATGGATTTTGTGTCGCGCTA
LOC_Os01g48990
Os.7712.1.S1_a_at--851--10831Chr01:28456775..28456799 (25 bp)
TTGTGTCGCGCTACCTACCAGCATA
LOC_Os01g48990
Os.7712.1.S1_a_at--797--1511Chr01:28456794..28456818 (25 bp)
AGCATACCACGCATATTTGCCCACT
LOC_Os01g48990
Os.7712.1.S1_a_at--659--10191Chr01:28456807..28456831 (25 bp)
TATTTGCCCACTCTATATAAAGAGG
LOC_Os01g48990
Os.7712.1.S1_a_at--956--1711Chr01:28456853..28456877 (25 bp)
ACCACCTGCTGGTCGTTGACATAGA
LOC_Os01g48990
Target Sequence 
TAAGAACCTTGAGGCATACTACGATGCATGGGACAGGTTCATTGGGTCATGGATGGTCATAAAAATAAAGGAACCTAGTT
GCGTGTACCAGTGGAGACTGCAGGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGGTCATG
GATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCACTCTATATAAAGAGGGACCAAACGGCTCGAACCC
AGACCACCTGCTGGTCGTTGACATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7712.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis