Browse Element(s) Details


OsAffx.14902.1.A1_at

Description tigr:9633.m02884
TID=OsAffx.14902.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g517405/11retrotransposon protein, putative, unclassified
LOC_Os06g205204/11retrotransposon protein, putative, unclassified
LOC_Os03g325404/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g346503/11retrotransposon protein, putative, unclassified
LOC_Os06g204601/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51690Os.9713.2.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.9713.1.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.48625.1.A1_s_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51700Os.8524.1.S1_at11/115+29577307..29580245Nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed
LOC_Os05g51710Os.47379.1.S1_at11/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51710Os.54251.1.S1_at1/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51720OsAffx.27408.1.S1_at11/115+29585174..29585566hypothetical protein
LOC_Os05g51730NANA5+29588091..29589721retrotransposon protein, putative, unclassified
LOC_Os05g51740OsAffx.14902.1.A1_at5/115+29593042..29598509retrotransposon protein, putative, unclassified
LOC_Os05g51750Os.49592.1.S1_at11/115+29605178..29607194aspartyl protease family protein, putative, expressed
LOC_Os05g51754Os.24111.1.S1_at11/115+29609679..29611350Rap8, putative, expressed
LOC_Os05g51754Os.24111.2.S1_at9/115+29609679..29611350Rap8, putative, expressed
LOC_Os05g51760OsAffx.19682.1.S1_at8/115+29612908..29616072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51770OsAffx.22947.1.S1_x_at6/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.2.S1_x_at5/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.3.S1_x_at4/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.5.S1_x_at2/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.5.S1_at1/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14902.1.A1_at--179--417Chr06:11790635..11790662 (25 bp)
ATCAGATTCCAAGTTTTCTCCTCTT
NONE
OsAffx.14902.1.A1_at--615--10311Chr05:18304735..18304759 (25 bp)
TTTCTCCTCTTCTAGTACTGCTCTA
NONE
OsAffx.14902.1.A1_at--122--7751Chr05:18304908..18304932 (25 bp)
GGTGTTCATCAACCCGTATGCGACT
NONE
OsAffx.14902.1.A1_at--813--10671Chr05:18304952..18304976 (25 bp)
TTCCAATCTCTCTCGAGCTTCGTAA
NONE
OsAffx.14902.1.A1_at--882--4776Chr12:976997..977021 (25 bp)
GCTTCGTAACCCCAACTACAACAAG
NONE
OsAffx.14902.1.A1_at--893--2876Chr12:977019..977043 (25 bp)
AAGTGGAAGGCCTTCTTCCGCTCGA
NONE
OsAffx.14902.1.A1_at--879--3656Chr06:11790917..11790941 (25 bp)
CTTCTTCCGCTCGATGTGTGGGAAA
LOC_Os06g20520
OsAffx.14902.1.A1_at--903--9493Chr12:977060..977084 (25 bp)
TCTCCTCGATCATCTTGACGCTGCT
NONE
OsAffx.14902.1.A1_at--533--5796Chr12:977076..977124 (25 bp)
GACGCTGCCTGGGAACAGGCCGATT
NONE
OsAffx.14902.1.A1_at--1048--4231Chr05:18305159..18305183 (25 bp)
CCGATCAATCGGCTTGGGACTTGTG
NONE
OsAffx.14902.1.A1_at--563--7631Chr05:18305174..18305198 (25 bp)
GGGACTTGTGGATCTCCATCGACAA
NONE
Target Sequence 
ATCAGATTCCAAGTTTTCTCCTCTTCTAGTACTGCTCTAGCGCCGCTTCCTCTGGTCGCTGCGTCCACCGAGCGCTGCCG
CCTCCCTGGCTGCTGCGCCCCTCCTCCCTCACCATGTCCACTTCCTCGGCTACCTCCGCTGCCACCGACTCCTCTACGGC
GTCGTCTTCCACCTCTACCGTCGCCCCGGTGTTCATCAACCCGTATGCGACTGTCGCCGTCAAGTCCCATGTTCCAATCT
CTCTCGAGCTTCGTAACCCCAACTACAACAAGTGGAAGGCCTTCTTCCGCTCGATGTGTGGGAAATTTGGTCTCCTCGAT
CATCTTGACGCTGCTCCTCCCGCCAACCCCGACGCTGCCTGGGAACAGGCCGATTGCTGCCTCCGCAGCTGGCTCTTCGG
CTCTGTCGCCGACGACGTCCTCGACCTCGCCATGGAGCCCGATCAATCGGCTTGGGACTTGTGGATCTCCATCGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14902.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis