Browse Element(s) Details


Os.9713.2.S1_at

Description gb:AK059614.1
DB_XREF= gi:32969632
TID=Os.9713.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9713 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F12, full insert sequence.
FL= gb:AK059614.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5169011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51670Os.10131.1.S1_a_at11/115+29548701..29552580UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os05g51680Os.10131.4.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51680Os.10131.3.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51690Os.9713.2.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.9713.1.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.48625.1.A1_s_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51700Os.8524.1.S1_at11/115+29577307..29580245Nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed
LOC_Os05g51710Os.47379.1.S1_at11/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51710Os.54251.1.S1_at1/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51720OsAffx.27408.1.S1_at11/115+29585174..29585566hypothetical protein
LOC_Os05g51730NANA5+29588091..29589721retrotransposon protein, putative, unclassified
LOC_Os05g51740OsAffx.14902.1.A1_at5/115+29593042..29598509retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9713.2.S1_at--287--5311Chr05:29575639..29575663 (25 bp)
GAAGGAGACATTCAGGTTTGATCAT
LOC_Os05g51690
Os.9713.2.S1_at--12--6871Chr05:29575654..29575678 (25 bp)
GTTTGATCATTTTTCTCTTGCGGTT
LOC_Os05g51690
Os.9713.2.S1_at--910--9571Chr05:29575669..29575693 (25 bp)
TCTTGCGGTTATGTTATGTACTTAC
LOC_Os05g51690
Os.9713.2.S1_at--1045--6451Chr05:29575720..29575744 (25 bp)
GATAAGGAATCGTTGTGAGCAAGCA
LOC_Os05g51690
Os.9713.2.S1_at--157--5171Chr05:29575738..29575762 (25 bp)
GCAAGCAACGGCTGTGTATTGTAAA
LOC_Os05g51690
Os.9713.2.S1_at--294--7411Chr05:29575765..29575789 (25 bp)
GTGTTTCCGAAACACAGGTGTCGAG
LOC_Os05g51690
Os.9713.2.S1_at--458--2751Chr05:29575792..29575816 (25 bp)
AAGAAATCACCTTTGCCCTTGTATG
LOC_Os05g51690
Os.9713.2.S1_at--120--4551Chr05:29575806..29575830 (25 bp)
GCCCTTGTATGTATATGTGCGTGGT
LOC_Os05g51690
Os.9713.2.S1_at--263--4671Chr05:29575824..29575848 (25 bp)
GCGTGGTGCTTCTTTACTCAAATTA
LOC_Os05g51690
Os.9713.2.S1_at--156--10491Chr05:29575846..29575870 (25 bp)
TTAAAGGCCATCAAAGCTATGACAC
LOC_Os05g51690
Os.9713.2.S1_at--287--5631Chr05:29575866..29575890 (25 bp)
GACACTGATTTTACTATTTCTGCCC
LOC_Os05g51690
Target Sequence 
GAAGGAGACATTCAGGTTTGATCATTTTTCTCTTGCGGTTATGTTATGTACTTACTACTGTATATAGGTAAGGTAGTGAT
AGATAAGGAATCGTTGTGAGCAAGCAACGGCTGTGTATTGTAAAGTGTGTTTCCGAAACACAGGTGTCGAGAAAAGAAAT
CACCTTTGCCCTTGTATGTATATGTGCGTGGTGCTTCTTTACTCAAATTAAAGGCCATCAAAGCTATGACACTGATTTTA
CTATTTCTGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9713.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis