Browse Element(s) Details


OsAffx.27408.1.S1_at

Description tigr:9633.m04885
TID=OsAffx.27408.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5172011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51690Os.9713.2.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.9713.1.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.48625.1.A1_s_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51700Os.8524.1.S1_at11/115+29577307..29580245Nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed
LOC_Os05g51710Os.47379.1.S1_at11/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51710Os.54251.1.S1_at1/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51720OsAffx.27408.1.S1_at11/115+29585174..29585566hypothetical protein
LOC_Os05g51730NANA5+29588091..29589721retrotransposon protein, putative, unclassified
LOC_Os05g51740OsAffx.14902.1.A1_at5/115+29593042..29598509retrotransposon protein, putative, unclassified
LOC_Os05g51750Os.49592.1.S1_at11/115+29605178..29607194aspartyl protease family protein, putative, expressed
LOC_Os05g51754Os.24111.1.S1_at11/115+29609679..29611350Rap8, putative, expressed
LOC_Os05g51754Os.24111.2.S1_at9/115+29609679..29611350Rap8, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27408.1.S1_at--738--10071Chr05:29585505..29585529 (25 bp)
TAGTGGCCAGCGTCCTGAGGGACCC
LOC_Os05g51720
OsAffx.27408.1.S1_at--445--1811Chr05:29585484..29585508 (25 bp)
ACCCGAGGTCTGGTGGCAAAGATGA
LOC_Os05g51720
OsAffx.27408.1.S1_at--794--2751Chr05:29585440..29585464 (25 bp)
AAGACACGAGCCTTTGACGCTACTA
LOC_Os05g51720
OsAffx.27408.1.S1_at--135--4591Chr05:29585422..29585446 (25 bp)
GCTACTACCCAAGCCACGGTGGAGG
LOC_Os05g51720
OsAffx.27408.1.S1_at--951--3191Chr05:29585371..29585395 (25 bp)
CAAGGCCATGACGAGATTAGTCGGA
LOC_Os05g51720
OsAffx.27408.1.S1_at--873--1111Chr05:29585347..29585371 (25 bp)
AGTGAGGTGCATGGCTCTAGAAGCA
LOC_Os05g51720
OsAffx.27408.1.S1_at--272--5391Chr05:29585328..29585352 (25 bp)
GAAGCAAGCCATTGCCAAGGAGCAA
LOC_Os05g51720
OsAffx.27408.1.S1_at--114--1491Chr05:29585308..29585332 (25 bp)
AGCAACGTGACGATGGTGGCAGACT
LOC_Os05g51720
OsAffx.27408.1.S1_at--961--7511Chr05:29585293..29585317 (25 bp)
GTGGCAGACTCATGTACTCGACGGA
LOC_Os05g51720
OsAffx.27408.1.S1_at--1017--731Chr05:29585282..29585306 (25 bp)
ATGTACTCGACGGATGGGCCACCAA
LOC_Os05g51720
OsAffx.27408.1.S1_at--292--5911Chr05:29585254..29585278 (25 bp)
GAGCTCGACCATAGTGCCAGATCTG
LOC_Os05g51720
Target Sequence 
TAGTGGCCAGCGTCCTGAGGGACCCGAGGTCTGGTGGCAAAGATGACGACGAGAGTACTAGGAGCAAGACACGAGCCTTT
GACGCTACTACCCAAGCCACGGTGGAGGAAGACGAGTTGACAGGTGCCGAGGAGCAAGGCCATGACGAGATTAGTCGGAG
TGAGGTGCATGGCTCTAGAAGCAAGCCATTGCCAAGGAGCAACGTGACGATGGTGGCAGACTCATGTACTCGACGGATGG
GCCACCAACACGAGCTCGACCATAGTGCCAGATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis