Browse Element(s) Details


Os.49592.1.S1_at

Description gb:AK068911.1
DB_XREF= gi:32978936
TID=Os.49592.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001F07, full insert sequence.
FL= gb:AK121242.1 gb:AK068911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5175011/11aspartyl protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51700Os.8524.1.S1_at11/115+29577307..29580245Nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed
LOC_Os05g51710Os.47379.1.S1_at11/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51710Os.54251.1.S1_at1/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51720OsAffx.27408.1.S1_at11/115+29585174..29585566hypothetical protein
LOC_Os05g51730NANA5+29588091..29589721retrotransposon protein, putative, unclassified
LOC_Os05g51740OsAffx.14902.1.A1_at5/115+29593042..29598509retrotransposon protein, putative, unclassified
LOC_Os05g51750Os.49592.1.S1_at11/115+29605178..29607194aspartyl protease family protein, putative, expressed
LOC_Os05g51754Os.24111.1.S1_at11/115+29609679..29611350Rap8, putative, expressed
LOC_Os05g51754Os.24111.2.S1_at9/115+29609679..29611350Rap8, putative, expressed
LOC_Os05g51760OsAffx.19682.1.S1_at8/115+29612908..29616072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51770OsAffx.22947.1.S1_x_at6/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.2.S1_x_at5/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.3.S1_x_at4/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.5.S1_x_at2/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.5.S1_at1/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49592.1.S1_at--327--6491Chr05:29606598..29606622 (25 bp)
GATACCCAGTTTCAGCATCGAGATG
LOC_Os05g51750
Os.49592.1.S1_at--1077--5111Chr05:29606650..29606674 (25 bp)
GCAAAGAGCATCGTCGTTCCGGAGG
LOC_Os05g51750
Os.49592.1.S1_at--831--8271Chr05:29606698..29606722 (25 bp)
GGCTTCAACCGGATTTCGCAAGGCC
LOC_Os05g51750
Os.49592.1.S1_at--507--7651Chr05:29606762..29606786 (25 bp)
GGGAGATCGACCACATGAGCACTGT
LOC_Os05g51750
Os.49592.1.S1_at--57--3011Chr05:29606807..29606831 (25 bp)
AATGCATCAACCATCAGCAGCTCAA
LOC_Os05g51750
Os.49592.1.S1_at--1033--1831Chr05:29606922..29606946 (25 bp)
ACGCATCTTCAATTCATCTGCTGCA
LOC_Os05g51750
Os.49592.1.S1_at--569--4291Chr05:29606962..29606986 (25 bp)
CCTATTAATTACTCATCTTCCGCAT
LOC_Os05g51750
Os.49592.1.S1_at--774--4631Chr05:29607006..29607030 (25 bp)
GCGTACGTACGTATCTATCATGTGC
LOC_Os05g51750
Os.49592.1.S1_at--605--7291Chr05:29607027..29607051 (25 bp)
GTGCGTACTCACTCCATTATTAAGC
LOC_Os05g51750
Os.49592.1.S1_at--697--2691Chr05:29607048..29607072 (25 bp)
AAGCTCGCATCGCATGTAATACTAT
LOC_Os05g51750
Os.49592.1.S1_at--580--331Chr05:29607107..29607131 (25 bp)
ATACATGTACTCTGCTCTACTACTA
LOC_Os05g51750
Target Sequence 
GATACCCAGTTTCAGCATCGAGATGGCCGGGGATGCGAGGCTGGCCGCCGACGCAAAGAGCATCGTCGTTCCGGAGGTCG
TCCCGGGGGTTGTCTGCCTCGGCTTCAACCGGATTTCGCAAGGCCCCTCCATCATCGGCAACGTGCTCATGCAGGAGCAC
ATCTGGGAGATCGACCACATGAGCACTGTGCTCAGGTTCAGGAAGGACAAATGCATCAACCATCAGCAGCTCAACAGGCA
CCACAAGAAGGCCTCTTCTTCCTCCTCCTCCTCTTCCTCTTCTCCTCCTCCTTATCCGGCCGCCTGACAACCTCGCTCGC
ACGCACGCATCTTCAATTCATCTGCTGCAGCGGCTCATCCCTCTCCTATTAATTACTCATCTTCCGCATATATATATATA
TATCTGTAGCGTACGTACGTATCTATCATGTGCGTACTCACTCCATTATTAAGCTCGCATCGCATGTAATACTATTACTT
ATATATGTAATATATAATTAATCATATATATACATGTACTCTGCTCTACTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis