Browse Element(s) Details


Os.24111.2.S1_at

Description gb:AK108209.1
DB_XREF= gi:32993418
TID=Os.24111.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-D08, full insert sequence.
FL= gb:AK107887.1 gb:AK108209.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g517549/11Rap8, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51720OsAffx.27408.1.S1_at11/115+29585174..29585566hypothetical protein
LOC_Os05g51730NANA5+29588091..29589721retrotransposon protein, putative, unclassified
LOC_Os05g51740OsAffx.14902.1.A1_at5/115+29593042..29598509retrotransposon protein, putative, unclassified
LOC_Os05g51750Os.49592.1.S1_at11/115+29605178..29607194aspartyl protease family protein, putative, expressed
LOC_Os05g51754Os.24111.1.S1_at11/115+29609679..29611350Rap8, putative, expressed
LOC_Os05g51754Os.24111.2.S1_at9/115+29609679..29611350Rap8, putative, expressed
LOC_Os05g51760OsAffx.19682.1.S1_at8/115+29612908..29616072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51770OsAffx.22947.1.S1_x_at6/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.2.S1_x_at5/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.3.S1_x_at4/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.5.S1_x_at2/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.5.S1_at1/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51780Os.23058.1.S1_at11/115+29634938..29636421Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24111.2.S1_at--564--8231Chr05:29610164..29610188 (25 bp)
GGCAACAGCAAATACGATCAGGAAC
LOC_Os05g51754
Os.24111.2.S1_at--279--2791Chr05:29610052..29610076 (25 bp)
AAGAGTCGATTACAGCGATGACGAT
LOC_Os05g51754
Os.24111.2.S1_at--400--6491Chr05:29609979..29610003 (25 bp)
GATACCAGCATATTCCTATAGCACC
LOC_Os05g51754
Os.24111.2.S1_at--1027--4371Chr05:29609956..29609980 (25 bp)
CCAAGGCTAATAAACAGGTGCTGCT
LOC_Os05g51754
Os.24111.2.S1_at--54--10291Chr05:29609925..29609949 (25 bp)
TTTCCATGGCAATGGTAACAACCAA
LOC_Os05g51754
Os.24111.2.S1_at--1081--331Chr05:29609809..29609833 (25 bp)
ATAAAGTCATATTGGCAGCATTGTG
LOC_Os05g51754
Os.24111.2.S1_at--1066--2331Chr05:29609776..29609800 (25 bp)
AAAGACAGGCACTTTGTGGAGCTAA
LOC_Os05g51754
Os.24111.2.S1_at--549--6471Chr05:29609750..29609774 (25 bp)
GATAAATAGGTTTCCCTTTGCTTTG
LOC_Os05g51754
Os.24111.2.S1_at--107--4731NONE
GCTGGTGTCGTTGTATTTTGCGATT
NONE
Os.24111.2.S1_at--1019--10391NONE
TTTTGCGATTTGTACCTGCACGGTA
NONE
Os.24111.2.S1_at--189--8951Chr05:29609695..29609719 (25 bp)
TGCACGGTACCGTACCTTACCTTTG
LOC_Os05g51754
Target Sequence 
GGCAACAGCAAATACGATCAGGAACACCAATTAAACCCAGCGTAAAGAAAGACAAACCGGAAAGTTCAAAAAAACCAAGC
TCATATAATAGTTCAGATTCAAAGGCAAAAAAAAGAGTCGATTACAGCGATGACGATGACGATTTCATTGTAAAACTGAA
GAGATCCAGGGGATGATAGTNTTCAGATACCAGCATATTCCTATAGCACCAAGGCTAATAAACAGGTGCTGCTNTGAGGT
TTCCATGGCAATGGTAACAACCAAATGGGTTCATGATGATTNTGGTGGAACNACATTTCTGTTTATTGTCAATATTGGAG
TAGAAAGAAAAATGGAGATCCTTTACAATGATAAAATAAAGTCATATTGGCAGCATTGTGTNTTATGTAAAGACAGGCAC
TTTGTGGAGCTAAAGATAAATAGGTTTCCCTTTGCTTTGCTGGTGTCGTTGTATTTTGCGATTTGTACCTGCACGGTACC
GTACCTTACCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24111.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis