Browse Element(s) Details


Os.23058.1.S1_at

Description gb:AK070817.1
DB_XREF= gi:32980840
TID=Os.23058.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023066I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023066I04, full insert sequence.
FL= gb:AK070817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5178011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51754Os.24111.1.S1_at11/115+29609679..29611350Rap8, putative, expressed
LOC_Os05g51754Os.24111.2.S1_at9/115+29609679..29611350Rap8, putative, expressed
LOC_Os05g51760OsAffx.19682.1.S1_at8/115+29612908..29616072transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g51770OsAffx.22947.1.S1_x_at6/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.2.S1_x_at5/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.3.S1_x_at4/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.5.S1_x_at2/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51770OsAffx.22947.5.S1_at1/115+29620348..29624911retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g51780Os.23058.1.S1_at11/115+29634938..29636421Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g51790Os.14983.1.S1_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51790Os.14983.1.S2_a_at11/115+29644885..29657503structural maintenance of chromosomes family protein, putative, expressed
LOC_Os05g51800OsAffx.27409.1.S1_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800OsAffx.27409.1.S1_x_at11/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative
LOC_Os05g51800Os.24682.1.A1_at2/115+29659567..29662333peptidyl-tRNA hydrolase family protein, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23058.1.S1_at--146--411Chr05:29635862..29635886 (25 bp)
ATCATGATCATCAGCGGAAGACACT
LOC_Os05g51780
Os.23058.1.S1_at--345--9411Chr05:29635957..29635981 (25 bp)
TCGTCGGGATCAGTGCGGTCCATGT
LOC_Os05g51780
Os.23058.1.S1_at--1071--3151Chr05:29636149..29636173 (25 bp)
AATTCCCTTGTCTAGTCGTCTATCT
LOC_Os05g51780
Os.23058.1.S1_at--438--7211Chr05:29636163..29636187 (25 bp)
GTCGTCTATCTCATCTATTCTAACT
LOC_Os05g51780
Os.23058.1.S1_at--430--7231Chr05:29636223..29636247 (25 bp)
GTCCCATTGGTCAGTGTCTTTGTTT
LOC_Os05g51780
Os.23058.1.S1_at--531--91Chr05:29636275..29636299 (25 bp)
ATTCCCTGTCTGTCCAATACTATTA
LOC_Os05g51780
Os.23058.1.S1_at--805--3091Chr05:29636290..29636314 (25 bp)
AATACTATTATCATGCTGGCCTGGT
LOC_Os05g51780
Os.23058.1.S1_at--236--7851Chr05:29636327..29636351 (25 bp)
GGTACCGTAGTACATAGCATAGCTT
LOC_Os05g51780
Os.23058.1.S1_at--652--1531Chr05:29636342..29636366 (25 bp)
AGCATAGCTTAGGAGAGGTACTGAC
LOC_Os05g51780
Os.23058.1.S1_at--778--1011Chr05:29636357..29636381 (25 bp)
AGGTACTGACCAAACCTGCTACTCC
LOC_Os05g51780
Os.23058.1.S1_at--596--191Chr05:29636397..29636421 (25 bp)
ATTTGCTACCGAGATTATTTTTAAG
LOC_Os05g51780
Target Sequence 
ATCATGATCATCAGCGGAAGACACTGCTGGCGGCAAGCGGCGGCAGGTCATCAGTCGACGCGGCGGCGAGGGCGAGGATG
ATATCATCGTCGTCGTCGTCGGGATCAGTGCGGTCCATGTCGGAGATGGTGAGCCTGCCGAGGCTGCGGGCGGCGATGAG
GGAGCGCCTGGCGCACGAGGACCGCTGGGTCCCCATCGCTCGTCGTACAGCGCGCTGGTTCGCCGGCCGCGAGAGCCGCC
ACGACGAGGCTGCCCCGGTGGTTGACTCGCCGCCGGCGTCCCATTCCAATTCCCTTGTCTAGTCGTCTATCTCATCTATT
CTAACTTCAAATCAAACAAANAGTCAAAACCCGCGCTGTGGGTCCCATTGGTCAGTGTCTTTGTTTTGTTTTGTTTTGTT
TTGTTGTACCATTATTCCCTGTCTGTCCAATACTATTATCATGCTGGCCTGGTGGGGTGGAGTCAGGTACCGTAGTACAT
AGCATAGCTTAGGAGAGGTACTGACCAAACCTGCTACTCCTTTTGTCCNTTAATTATTTGCTACCGAGATTATTTTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis