Browse Element(s) Details


Os.8524.1.S1_at

Description gb:AK066391.1
DB_XREF= gi:32976409
TID=Os.8524.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067E14, full insert sequence.
FL= gb:AK061858.1 gb:AK066391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5170011/11Nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51670Os.10131.1.S1_a_at11/115+29548701..29552580UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os05g51680Os.10131.4.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51680Os.10131.3.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51690Os.9713.2.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.9713.1.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.48625.1.A1_s_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51700Os.8524.1.S1_at11/115+29577307..29580245Nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed
LOC_Os05g51710Os.47379.1.S1_at11/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51710Os.54251.1.S1_at1/115+29580786..29584275pleckstrin homology domain-containing protein, putative, expressed
LOC_Os05g51720OsAffx.27408.1.S1_at11/115+29585174..29585566hypothetical protein
LOC_Os05g51730NANA5+29588091..29589721retrotransposon protein, putative, unclassified
LOC_Os05g51740OsAffx.14902.1.A1_at5/115+29593042..29598509retrotransposon protein, putative, unclassified
LOC_Os05g51750Os.49592.1.S1_at11/115+29605178..29607194aspartyl protease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0009585biological_processred, far-red light phototransduction
GO:0009734biological_processauxin mediated signaling pathway
GO:0042542biological_processresponse to hydrogen peroxide
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0004550molecular_functionnucleoside diphosphate kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8524.1.S1_at--936--5611Chr05:29578610..29578634 (25 bp)
GACAGACCTTTCTTCAATGGATTGT
LOC_Os05g51700
Os.8524.1.S1_at--1120--10831Chr05:29578589..29578613 (25 bp)
TTGTGTGACTTCCTTAGCTCTGGCC
LOC_Os05g51700
Os.8524.1.S1_at--352--6611Chr05:29578008..29578032 (25 bp)
GATTGGTGCTACAGACCCACAGAAG
LOC_Os05g51700
Os.8524.1.S1_at--776--8811Chr05:29577702..29577969 (25 bp)
TGTTGGCAGGAACATCATCCATGGA
LOC_Os05g51700
Os.8524.1.S1_at--465--5411Chr05:29577679..29577703 (25 bp)
GAAGCGATGGCCCAGAGACTGCAAA
LOC_Os05g51700
Os.8524.1.S1_at--185--9511Chr05:29577642..29577666 (25 bp)
TCTCTGGTTTGAGCCCAGGGAGCTG
LOC_Os05g51700
Os.8524.1.S1_at--700--8591Chr05:29577619..29577643 (25 bp)
TGGTCTCTTACACCAGCAACGAAGA
LOC_Os05g51700
Os.8524.1.S1_at--397--10431Chr05:29577459..29577483 (25 bp)
TTATGCCCATGTGATCTGGCGCAAA
LOC_Os05g51700
Os.8524.1.S1_at--920--1731Chr05:29577409..29577433 (25 bp)
ACCTTCAATTGTAGAGCGTGCACTG
LOC_Os05g51700
Os.8524.1.S1_at--899--1373Chr12:11489075..11489094 (20 bp)
AGACCATCACCTTCACTCAAATGGT
NONE
Os.8524.1.S1_at--1031--7751Chr05:29577343..29577367 (25 bp)
GGTGATGCCACTTGTTTTGTTATTG
LOC_Os05g51700
Target Sequence 
GACAGACCTTTCTTCAATGGATTGTGTGACTTCCTTAGCTCTGGCCCTGTGCTTGCCATGGTTTGGGAAGGAGAGGGTGT
TATCAAGTACGGGAGAAAACTGATTGGTGCTACAGACCCACAGAAGTCTGAACCAGGAACCATCAGGGGTGACCTTGCTG
TTGTTGTTGGCAGGAACATCATCCATGGAAGCGATGGCCCAGAGACTGCAAAGGCTGAGATTGGTCTCTGGTTTGAGCCC
AGGGAGCTGGTCTCTTACACCAGCAACGAAGAGAAGTGGATCTACGGGGTCAACTAACCGGCGAATCATCTCCCCTGTTT
GTTTTGTTTTTTTTTCATTTTCTCTCACTTTACCTAATTACATCACCATGGAAGAGTGTAATAAAGTTGCGATCGTGACA
TTTGGGGTTATGCCCATGTGATCTGGCGCAAATAAGAGGCCTCAAGAAGAATTGTCTACCTTCAATTGTAGAGCGTGCAC
TGAGTAATCAGACCATCACCTTCACTCAAATGGTCGAACGGATGGTGATGCCACTTGTTTTGTTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis