Browse Element(s) Details

Os.10131.4.A1_at

Description

gb:AK100748.1
DB_XREF= gi:32985957
TID=Os.10131.4
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsUGE-1 mRNA for UDP-glucose 4-epimerase, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118J22, full insert sequence.
FL= gb:AK100748.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g51680	11/11	SCP-like extracellular protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g51630	Os.10391.1.S1_a_at	11/11	5	+	29524916..29533060	early-responsive to dehydration protein, putative, expressed
LOC_Os05g51630	Os.2259.1.S1_s_at	1/11	5	+	29524916..29533060	early-responsive to dehydration protein, putative, expressed
LOC_Os05g51640	Os.4803.1.S1_at	11/11	5	+	29534432..29539656	adhesion regulating molecule family, putative, expressed
LOC_Os05g51650	Os.7005.1.S1_s_at	11/11	5	+	29539790..29541836	U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51650	OsAffx.27407.1.S1_at	10/11	5	+	29539790..29541836	U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51660	OsAffx.15200.4.A1_at	11/11	5	+	29541501..29542508	SCP-like extracellular protein, expressed
LOC_Os05g51660	Os.53200.1.S1_s_at	11/11	5	+	29541501..29542508	SCP-like extracellular protein, expressed
LOC_Os05g51670	Os.10131.1.S1_a_at	11/11	5	+	29548701..29552580	UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os05g51680	Os.10131.4.A1_at	11/11	5	+	29551649..29554990	SCP-like extracellular protein, expressed
LOC_Os05g51680	Os.10131.3.A1_at	11/11	5	+	29551649..29554990	SCP-like extracellular protein, expressed
LOC_Os05g51690	Os.9713.2.S1_at	11/11	5	+	29573293..29577043	CCT motif family protein, expressed
LOC_Os05g51690	Os.9713.1.S1_at	11/11	5	+	29573293..29577043	CCT motif family protein, expressed
LOC_Os05g51690	Os.48625.1.A1_s_at	11/11	5	+	29573293..29577043	CCT motif family protein, expressed
LOC_Os05g51700	Os.8524.1.S1_at	11/11	5	+	29577307..29580245	Nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0005576	cellular_component	extracellular region

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10131.4.A1_at--920--527	1	Chr05:29554082..29554106 (25 bp)	GAAGGGAGAGGTGCCGCTAACCTAA	LOC_Os05g51680
Os.10131.4.A1_at--248--131	1	Chr05:29554076..29554100 (25 bp)	AGAGGTGCCGCTAACCTAACCCATT	LOC_Os05g51680
Os.10131.4.A1_at--1116--181	1	Chr05:29554030..29554054 (25 bp)	ACGCGTTCCTGCACACTAGCTAGCT	LOC_Os05g51680
Os.10131.4.A1_at--626--1001	1	Chr05:29554014..29554038 (25 bp)	TAGCTAGCTACCTGTCATTTCTTCA	LOC_Os05g51680
Os.10131.4.A1_at--250--157	1	Chr05:29554009..29554033 (25 bp)	AGCTACCTGTCATTTCTTCATTTCT	LOC_Os05g51680
Os.10131.4.A1_at--375--957	1	Chr05:29553995..29554019 (25 bp)	TCTTCATTTCTTTCTAGCTAGTGCC	LOC_Os05g51680
Os.10131.4.A1_at--261--1057	1	Chr05:29553988..29554012 (25 bp)	TTCTTTCTAGCTAGTGCCAGATCGA	LOC_Os05g51680
Os.10131.4.A1_at--126--487	1	Chr05:29553979..29554003 (25 bp)	GCTAGTGCCAGATCGATTTACTTTT	LOC_Os05g51680
Os.10131.4.A1_at--123--729	1	Chr05:29553975..29553999 (25 bp)	GTGCCAGATCGATTTACTTTTAATT	LOC_Os05g51680
Os.10131.4.A1_at--669--1029	1	Chr05:29553952..29553976 (25 bp)	TTTCCTTCTGGAGTAGCATATATAT	LOC_Os05g51680
Os.10131.4.A1_at--726--495	1	Chr05:29553937..29553961 (25 bp)	GCATATATATACGTATTTCAGTTTT	LOC_Os05g51680

Target Sequence

GAAGGGAGAGGTGCCGCTAACCTAACCCATTCCATTCCATTCCTCCACCCACACGCGTTCCTGCACACTAGCTAGCTACC
TGTCATTTCTTCATTTCTTTCTAGCTAGTGCCAGATCGATTTACTTTTAATTTCCTTCTGGAGTAGCATATATATACGTA
TTTCAGTTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis