Browse Element(s) Details


Os.2259.1.S1_s_at

Description gb:AF073696.1
DB_XREF= gi:4574136
GEN=rcs2
TID=Os.2259.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.2259 (NCBI UniGene Cluster)
DEF=Oryza sativa cysteine synthase (rcs2) mRNA, complete cds.
PROD=cysteine synthase
FL= gb:AF073696.1 gb:AK067454.1 gb:AK062038.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3684011/11Cysteine synthase, putative, expressed
LOC_Os05g516301/11early-responsive to dehydration protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36800OsAffx.15784.1.S1_at11/116+21676678..21682941MBOAT family protein
LOC_Os06g36810Os.55116.1.S1_at11/116+21684270..21685013expressed protein
LOC_Os06g36820OsAffx.27968.1.S1_at1/116+21691503..21691822Cysteine synthase, putative
LOC_Os06g36830OsAffx.27968.1.S1_at7/116+21694605..21698564Pyridoxal-phosphate dependent enzyme family protein
LOC_Os06g36840Os.2259.1.S1_at11/116+21699487..21702433Cysteine synthase, putative, expressed
LOC_Os06g36840Os.2259.1.S1_s_at11/116+21699487..21702433Cysteine synthase, putative, expressed
LOC_Os06g36850OsAffx.15785.1.S1_at10/116+21707954..21713109Pyridoxal-phosphate dependent enzyme family protein
LOC_Os06g36859NANA6+21720468..21721811transposon protein, putative, Pong sub-class
LOC_Os06g36870NANA6+21722223..21724393transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006535biological_processcysteine biosynthesis from serine
GO:0019344biological_processcysteine biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004124molecular_functioncysteine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2259.1.S1_s_at--431--8691Chr06:21699844..21699868 (25 bp)
TGTGACAATGTTCCCGAGCGGCGGT
LOC_Os06g36840
Os.2259.1.S1_s_at--912--9471Chr06:21699804..21699828 (25 bp)
TCTGATCTCTTTGCACCTGTTAGAG
LOC_Os06g36840
Os.2259.1.S1_s_at--497--10331Chr06:21699730..21699754 (25 bp)
TTTCAGGCACTGTACACATGTGTTT
LOC_Os06g36840
Os.2259.1.S1_s_at--725--8191Chr06:21699621..21699645 (25 bp)
GGAAGAGCAAGAATTTCAGCATAAT
LOC_Os06g36840
Os.2259.1.S1_s_at--15--2991Chr06:21699599..21699623 (25 bp)
AATGTGATGTGCTCCTTTGTGCATG
LOC_Os06g36840
Os.2259.1.S1_s_at--622--4791Chr06:21699589..21699613 (25 bp)
GCTCCTTTGTGCATGTGTTGTAAAT
LOC_Os06g36840
Os.2259.1.S1_s_at--587--10231Chr06:21699563..21699587 (25 bp)
TATTGTATATCCTAATATGCCGGCA
LOC_Os06g36840
Os.2259.1.S1_s_at--1071--3091Chr06:21699550..21699574 (25 bp)
AATATGCCGGCAAAGTGGTTGTCTA
LOC_Os06g36840
Os.2259.1.S1_s_at--203--7511Chr06:21699536..21699560 (25 bp)
GTGGTTGTCTATGACCTACACAAGT
LOC_Os06g36840
Os.2259.1.S1_s_at--543--7151Chr06:21699530..21699554 (25 bp)
GTCTATGACCTACACAAGTTGAAAT
LOC_Os06g36840
Os.2259.1.S1_s_at--160--2296Chr05:29530699..29530723 (25 bp)
AAATGGGACCAATCTAGGAAGGACT
LOC_Os05g51630
Target Sequence 
TGTGACAATGTTCCCGAGCGGCGGTGAAAGATACATGAACTCTGATCTCTTTGCACCTGTTAGAGAGGAATGTGATAATA
TGACCTTCTGATGATGTCTTGGAGCTGCTCTCCTTTTCAGGCACTGTACACATGTGTTTTCCACTTTTCCTCCATATTGT
TACTTAAGATATGCTTCATAGTTCAGAGCACACTATACATTTTTCTTGTTGCTTCTTTGTTGAGGAAGAGCAAGAATTTC
AGCATAATGTGATGTGCTCCTTTGTGCATGTGTTGTAAATTTATTGTATATCCTAATATGCCGGCAAAGTGGTTGTCTAT
GACCTACACAAGTTGAAATAAAAAAAAATGGGACCAATCTAGGAAGGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2259.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis