Browse Element(s) Details


OsAffx.15784.1.S1_at

Description tigr:9634.m03501
TID=OsAffx.15784.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=diacylglycerol acyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3680011/11MBOAT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36760OsAffx.15783.1.S1_at11/116+21652898..21653380hypothetical protein
LOC_Os06g36770Os.6155.1.S1_at11/116+21653909..21661474Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
LOC_Os06g36780OsAffx.27966.1.S1_at11/116+21663958..21664404hypothetical protein
LOC_Os06g36790OsAffx.27967.1.S1_at11/116+21670240..21670560hypothetical protein
LOC_Os06g36800OsAffx.15784.1.S1_at11/116+21676678..21682941MBOAT family protein
LOC_Os06g36810Os.55116.1.S1_at11/116+21684270..21685013expressed protein
LOC_Os06g36820OsAffx.27968.1.S1_at1/116+21691503..21691822Cysteine synthase, putative
LOC_Os06g36830OsAffx.27968.1.S1_at7/116+21694605..21698564Pyridoxal-phosphate dependent enzyme family protein
LOC_Os06g36840Os.2259.1.S1_at11/116+21699487..21702433Cysteine synthase, putative, expressed
LOC_Os06g36840Os.2259.1.S1_s_at11/116+21699487..21702433Cysteine synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0007568biological_processaging
GO:0009409biological_processresponse to cold
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009749biological_processresponse to glucose stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010029biological_processregulation of seed germination
GO:0010030biological_processpositive regulation of seed germination
GO:0019432biological_processtriacylglycerol biosynthesis
GO:0045995biological_processregulation of embryonic development
GO:0009941cellular_componentchloroplast envelope
GO:0016020cellular_componentmembrane
GO:0004144molecular_functiondiacylglycerol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15784.1.S1_at--839--7571Chr06:21680086..21680110 (25 bp)
GGGCGTGACACATGACATTTCTATA
LOC_Os06g36800
OsAffx.15784.1.S1_at--449--2311Chr06:21680142..21680166 (25 bp)
AAAGGCTATCCTACTTCATGTTGGC
LOC_Os06g36800
OsAffx.15784.1.S1_at--238--10831Chr06:21680162..21680185 (24 bp)
TTGGCCCCAACACTTTGTTACCAGT
LOC_Os06g36800
OsAffx.15784.1.S1_at--513--10751Chr06:21680990..21681014 (25 bp)
TTGAATATTCTTGCTGAGCTCCTCT
LOC_Os06g36800
OsAffx.15784.1.S1_at--1034--8911Chr06:21681004..21681028 (25 bp)
TGAGCTCCTCTGTTTTGGTGATCGT
LOC_Os06g36800
OsAffx.15784.1.S1_at--946--7711Chr06:21682094..21682118 (25 bp)
GGGTGTTGCTATCCTAATCTCGTTC
LOC_Os06g36800
OsAffx.15784.1.S1_at--458--9271Chr06:21682117..21682141 (25 bp)
TCCTGGTTTCAGCTGCATTTCATGA
LOC_Os06g36800
OsAffx.15784.1.S1_at--237--1571Chr06:21682273..21682297 (25 bp)
AGCTATGTGTTGCTGTTCCATGCCA
LOC_Os06g36800
OsAffx.15784.1.S1_at--518--3151Chr06:21682306..21682330 (25 bp)
AATTCTGGGCATTTATTGGGATCAT
LOC_Os06g36800
OsAffx.15784.1.S1_at--580--731Chr06:21682667..21682691 (25 bp)
ATGTTGTTAGTGTCTGTCCTGCTCA
LOC_Os06g36800
OsAffx.15784.1.S1_at--886--3431Chr06:21682690..21682714 (25 bp)
CAGATTCCCCTGGTATTCTTGACGA
LOC_Os06g36800
Target Sequence 
GGGCGTGACACATGACATTTCTATAGATCCGGAGAACATTAAATGGCCAACCTTTAAAAGGCTATCCTACTTCATGTTGG
CCCCAACACTTTGTTACCAGTACATAAATCCAATTGTGAAGAATTCGAAGCATCCATTGAAAGGGAATTTCTTGAATGCT
ATAGAGAGAGTATTGAAATTATCAGTGCCAACATTATATGTCTGGCTTTGCATGTTCTACTGTTTTTTCCATCTCTGGTT
GAATATTCTTGCTGAGCTCCTCTGTTTTGGTGATCGTGAATTCTACAAGGACTGGTGGAATGCCAAAACAGTTGAAGAGC
CTGTTCACAAGTGGGTCATTCGACATATATATTTTCCATGCATAAGGAATGGTTTTTCAAAGGGTGTTGCTATCCTAATC
TCGTTCCTGGTTTCAGCTGCATTTCATGAGCTATGTGTTGCTGTTCCATGCCACATTTTTAAATTCTGGGCATTTATTGG
GATCATGTTTCAGGCTGATGTTGTTAGTGTCTGTCCTGCTCAGATTCCCCTGGTATTCTTGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15784.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis