Browse Element(s) Details


OsAffx.27967.1.S1_at

Description tigr:9634.m03500
TID=OsAffx.27967.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3679011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36750OsAffx.5031.4.S1_at11/116+21648057..21648551hypothetical protein
LOC_Os06g36750OsAffx.5031.4.S1_x_at11/116+21648057..21648551hypothetical protein
LOC_Os06g36750OsAffx.5031.3.S1_x_at1/116+21648057..21648551hypothetical protein
LOC_Os06g36760OsAffx.15783.1.S1_at11/116+21652898..21653380hypothetical protein
LOC_Os06g36770Os.6155.1.S1_at11/116+21653909..21661474Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
LOC_Os06g36780OsAffx.27966.1.S1_at11/116+21663958..21664404hypothetical protein
LOC_Os06g36790OsAffx.27967.1.S1_at11/116+21670240..21670560hypothetical protein
LOC_Os06g36800OsAffx.15784.1.S1_at11/116+21676678..21682941MBOAT family protein
LOC_Os06g36810Os.55116.1.S1_at11/116+21684270..21685013expressed protein
LOC_Os06g36820OsAffx.27968.1.S1_at1/116+21691503..21691822Cysteine synthase, putative
LOC_Os06g36830OsAffx.27968.1.S1_at7/116+21694605..21698564Pyridoxal-phosphate dependent enzyme family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27967.1.S1_at--789--9971Chr06:21670488..21670512 (25 bp)
TACCATGCCGCACGGAGCTCGCTAG
LOC_Os06g36790
OsAffx.27967.1.S1_at--671--1931Chr06:21670477..21670501 (25 bp)
ACGGAGCTCGCTAGGGTCTCAGCAA
LOC_Os06g36790
OsAffx.27967.1.S1_at--100--10091Chr06:21670466..21670490 (25 bp)
TAGGGTCTCAGCAATTGCCTCCATT
LOC_Os06g36790
OsAffx.27967.1.S1_at--202--3171Chr06:21670454..21670478 (25 bp)
AATTGCCTCCATTGCTCGGAGTGAG
LOC_Os06g36790
OsAffx.27967.1.S1_at--679--1111Chr06:21670435..21670459 (25 bp)
AGTGAGGTGGACAACCACGGGCAAT
LOC_Os06g36790
OsAffx.27967.1.S1_at--80--4251Chr06:21670398..21670422 (25 bp)
CCGGAGAAGGGAACGGCCATCTATC
LOC_Os06g36790
OsAffx.27967.1.S1_at--888--1071Chr06:21670391..21670415 (25 bp)
AGGGAACGGCCATCTATCGCCTGGT
LOC_Os06g36790
OsAffx.27967.1.S1_at--149--3511Chr06:21670338..21670362 (25 bp)
CATGTCGCCTTCAGATCTGAAGTGC
LOC_Os06g36790
OsAffx.27967.1.S1_at--471--10531Chr06:21670329..21670353 (25 bp)
TTCAGATCTGAAGTGCCCAGCAAGG
LOC_Os06g36790
OsAffx.27967.1.S1_at--546--2851Chr06:21670319..21670343 (25 bp)
AAGTGCCCAGCAAGGACAAGAACTC
LOC_Os06g36790
OsAffx.27967.1.S1_at--529--9591Chr06:21670284..21670308 (25 bp)
TCATTGTTGAGCCTCGGCCTCCTAG
LOC_Os06g36790
Target Sequence 
TACCATGCCGCACGGAGCTCGCTAGGGTCTCAGCAATTGCCTCCATTGCTCGGAGTGAGGTGGACAACCACGGGCAATGA
GAAGGAGGGGCCGGAGAAGGGAACGGCCATCTATCGCCTGGTCCATGCCATTGCCGGCTGCAGCTTCCTCCATGTCGCCT
TCAGATCTGAAGTGCCCAGCAAGGACAAGAACTCCCCAACCCCCTCATTGTTGAGCCTCGGCCTCCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis