Browse Element(s) Details


OsAffx.5031.4.S1_at

Description tigr:9634.m03495
TID=OsAffx.5031.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3675011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36730OsAffx.20387.1.S1_x_at1/116+21622424..21628581retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g36740Os.11886.1.S1_at11/116+21636470..21640985Pollen-specific protein SF21, putative, expressed
LOC_Os06g36740Os.50340.2.S1_x_at1/116+21636470..21640985Pollen-specific protein SF21, putative, expressed
LOC_Os06g36750OsAffx.5031.4.S1_at11/116+21648057..21648551hypothetical protein
LOC_Os06g36750OsAffx.5031.4.S1_x_at11/116+21648057..21648551hypothetical protein
LOC_Os06g36750OsAffx.5031.3.S1_x_at1/116+21648057..21648551hypothetical protein
LOC_Os06g36760OsAffx.15783.1.S1_at11/116+21652898..21653380hypothetical protein
LOC_Os06g36770Os.6155.1.S1_at11/116+21653909..21661474Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
LOC_Os06g36780OsAffx.27966.1.S1_at11/116+21663958..21664404hypothetical protein
LOC_Os06g36790OsAffx.27967.1.S1_at11/116+21670240..21670560hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5031.4.S1_at--498--4831Chr06:21648174..21648198 (25 bp)
GCTCACTTCCTCTGGGTTACTCCAA
LOC_Os06g36750
OsAffx.5031.4.S1_at--771--10651Chr06:21648180..21648204 (25 bp)
TTCCTCTGGGTTACTCCAACCACGG
LOC_Os06g36750
OsAffx.5031.4.S1_at--59--8631Chr06:21648186..21648210 (25 bp)
TGGGTTACTCCAACCACGGCGACGA
LOC_Os06g36750
OsAffx.5031.4.S1_at--580--5211Chr06:21648435..21648459 (25 bp)
GAATTCCGCGGCAGCGTTCATGGCA
LOC_Os06g36750
OsAffx.5031.4.S1_at--1017--9291Chr06:21648439..21648463 (25 bp)
TCCGCGGCAGCGTTCATGGCACTTA
LOC_Os06g36750
OsAffx.5031.4.S1_at--416--4691Chr06:21648442..21648466 (25 bp)
GCGGCAGCGTTCATGGCACTTACCG
LOC_Os06g36750
OsAffx.5031.4.S1_at--956--8251Chr06:21648444..21648468 (25 bp)
GGCAGCGTTCATGGCACTTACCGCT
LOC_Os06g36750
OsAffx.5031.4.S1_at--585--1631Chr06:21648447..21648471 (25 bp)
AGCGTTCATGGCACTTACCGCTGTT
LOC_Os06g36750
OsAffx.5031.4.S1_at--418--6751Chr06:21648450..21648474 (25 bp)
GTTCATGGCACTTACCGCTGTTGTT
LOC_Os06g36750
OsAffx.5031.4.S1_at--282--9631Chr06:21648452..21648476 (25 bp)
TCATGGCACTTACCGCTGTTGTTCG
LOC_Os06g36750
OsAffx.5031.4.S1_at--368--8231Chr06:21648456..21648480 (25 bp)
GGCACTTACCGCTGTTGTTCGCCGG
LOC_Os06g36750
Target Sequence 
GCTCACTTCCTCTGGGTTACTCCAACCACGGCGACGACGACGACAGCCACCACGGCGACAACGACCACGACGATGACGAG
GGCGGTGCTGCAAGAAAGCAGCAGCTGCTGCGGCGGCCGCGGCGACGACAAGGCCGTCGACCAGCTGATGGCGGCCACCA
CGCCGGCGAGCCAGCTGCAGATGGACTACACCATGGACCAGCTCCGGAACGACATCGCGGCGGCGGCGGCGGCGATGGCC
TCGCCACCATCACCGGTCTGGGAATTCCGCGGCAGCGTTCATGGCACTTACCGCTGTTGTTCGCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5031.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis