Browse Element(s) Details


OsAffx.27966.1.S1_at

Description tigr:9634.m03499
TID=OsAffx.27966.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3678011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36740Os.11886.1.S1_at11/116+21636470..21640985Pollen-specific protein SF21, putative, expressed
LOC_Os06g36740Os.50340.2.S1_x_at1/116+21636470..21640985Pollen-specific protein SF21, putative, expressed
LOC_Os06g36750OsAffx.5031.4.S1_at11/116+21648057..21648551hypothetical protein
LOC_Os06g36750OsAffx.5031.4.S1_x_at11/116+21648057..21648551hypothetical protein
LOC_Os06g36750OsAffx.5031.3.S1_x_at1/116+21648057..21648551hypothetical protein
LOC_Os06g36760OsAffx.15783.1.S1_at11/116+21652898..21653380hypothetical protein
LOC_Os06g36770Os.6155.1.S1_at11/116+21653909..21661474Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
LOC_Os06g36780OsAffx.27966.1.S1_at11/116+21663958..21664404hypothetical protein
LOC_Os06g36790OsAffx.27967.1.S1_at11/116+21670240..21670560hypothetical protein
LOC_Os06g36800OsAffx.15784.1.S1_at11/116+21676678..21682941MBOAT family protein
LOC_Os06g36810Os.55116.1.S1_at11/116+21684270..21685013expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27966.1.S1_at--245--6151Chr06:21664348..21664372 (25 bp)
GAGGTGCCCATGGACACATTATCAC
LOC_Os06g36780
OsAffx.27966.1.S1_at--310--1971Chr06:21664320..21664344 (25 bp)
ACTGTAACTCATGTCGCTATCAACC
LOC_Os06g36780
OsAffx.27966.1.S1_at--120--1331Chr06:21664265..21664289 (25 bp)
AGAGGAACGCTCCAAGAGCTCCAGG
LOC_Os06g36780
OsAffx.27966.1.S1_at--498--2331Chr06:21664192..21664216 (25 bp)
AAAGCACAGCCCCTCATGGGTTGTG
LOC_Os06g36780
OsAffx.27966.1.S1_at--3--7931Chr06:21664174..21664198 (25 bp)
GGTTGTGCTTGGAGTACACCTTCAA
LOC_Os06g36780
OsAffx.27966.1.S1_at--1112--9831Chr06:21664160..21664184 (25 bp)
TACACCTTCAATTTGCCCCTGAGTA
LOC_Os06g36780
OsAffx.27966.1.S1_at--183--2831Chr06:21664089..21664113 (25 bp)
AAGTACGACCCCTCATGGGATGTGC
LOC_Os06g36780
OsAffx.27966.1.S1_at--1041--1791Chr06:21664038..21664062 (25 bp)
ACCGCCGAGTGCCTAGAGGAGCATA
LOC_Os06g36780
OsAffx.27966.1.S1_at--459--5931Chr06:21664020..21664044 (25 bp)
GAGCATATATGCATGGACCCTACGA
LOC_Os06g36780
OsAffx.27966.1.S1_at--454--1811Chr06:21664004..21664028 (25 bp)
ACCCTACGAAGCCTCGCATTGAATG
LOC_Os06g36780
OsAffx.27966.1.S1_at--1081--3591Chr06:21663988..21664012 (25 bp)
CATTGAATGCGAGGCGGTGTATACC
LOC_Os06g36780
Target Sequence 
GAGGTGCCCATGGACACATTATCACGATACTGTAACTCATGTCGCTATCAACCAAATTCAAGGGACTATTGAGATACATC
TAAAGAGGAACGCTCCAAGAGCTCCAGGCGCAACCTCTTGTGGGTTGTGCTCGGGGTGCATCTGCCATAAGCCCCCAAAG
CACAGCCCCTCATGGGTTGTGCTTGGAGTACACCTTCAATTTGCCCCTGAGTACGGCCCCCCGCGGGTTGTACTCGGGGC
ACATCTACAGCCGGCAGCCAAGTACGACCCCTCATGGGATGTGCTCGGGGTACATCTGCCTCCGCGCTCGACCGCCGAGT
GCCTAGAGGAGCATATATGCATGGACCCTACGAAGCCTCGCATTGAATGCGAGGCGGTGTATACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27966.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis