Browse Element(s) Details


Os.55116.1.S1_at

Description gb:AK107513.1
DB_XREF= gi:32992722
TID=Os.55116.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55116 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-F01, full insert sequence.
FL= gb:AK107513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3681011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36770Os.6155.1.S1_at11/116+21653909..21661474Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
LOC_Os06g36780OsAffx.27966.1.S1_at11/116+21663958..21664404hypothetical protein
LOC_Os06g36790OsAffx.27967.1.S1_at11/116+21670240..21670560hypothetical protein
LOC_Os06g36800OsAffx.15784.1.S1_at11/116+21676678..21682941MBOAT family protein
LOC_Os06g36810Os.55116.1.S1_at11/116+21684270..21685013expressed protein
LOC_Os06g36820OsAffx.27968.1.S1_at1/116+21691503..21691822Cysteine synthase, putative
LOC_Os06g36830OsAffx.27968.1.S1_at7/116+21694605..21698564Pyridoxal-phosphate dependent enzyme family protein
LOC_Os06g36840Os.2259.1.S1_at11/116+21699487..21702433Cysteine synthase, putative, expressed
LOC_Os06g36840Os.2259.1.S1_s_at11/116+21699487..21702433Cysteine synthase, putative, expressed
LOC_Os06g36850OsAffx.15785.1.S1_at10/116+21707954..21713109Pyridoxal-phosphate dependent enzyme family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55116.1.S1_at--499--2071Chr06:21684831..21684855 (25 bp)
ACTTGAGGTGCCACAGCGCCTACTA
LOC_Os06g36810
Os.55116.1.S1_at--34--9891Chr06:21684811..21684835 (25 bp)
TACTACGTCACCTCGACGTACTCTG
LOC_Os06g36810
Os.55116.1.S1_at--560--9251Chr06:21684773..21684797 (25 bp)
TCCTCTCTGGTACGACGATGCCGGC
LOC_Os06g36810
Os.55116.1.S1_at--910--2891Chr06:21684574..21684598 (25 bp)
AAGGTGAAGGTGTCGCTCCAGAGCA
LOC_Os06g36810
Os.55116.1.S1_at--805--9211Chr06:21684558..21684582 (25 bp)
TCCAGAGCAGCATGCGGTGGATCAA
LOC_Os06g36810
Os.55116.1.S1_at--948--8111Chr06:21684512..21684536 (25 bp)
GGACGGCTGGTGGTAATAAGCTCAT
LOC_Os06g36810
Os.55116.1.S1_at--143--8631Chr06:21684505..21684529 (25 bp)
TGGTGGTAATAAGCTCATGCTGCTG
LOC_Os06g36810
Os.55116.1.S1_at--809--6312Chr04:21688770..21688789 (20 bp)
GATGAATTGGTGGTGATCACTGATC
NONE
Os.55116.1.S1_at--130--7411Chr06:21684441..21684465 (25 bp)
GTGATCACTGATCACTACTCATCAG
LOC_Os06g36810
Os.55116.1.S1_at--423--6511Chr06:21684405..21684429 (25 bp)
GATATCACTTATCATCAGAGTTGTC
LOC_Os06g36810
Os.55116.1.S1_at--228--1591Chr06:21684302..21684326 (25 bp)
AGCTCGGCTGCAGTAATCTGTTGTA
LOC_Os06g36810
Target Sequence 
ACTTGAGGTGCCACAGCGCCTACTACGTCACCTCGACGTACTCTGCTCCTCCTCCTCCTCCTCTCTGGTACGACGATGCC
GGCAGCGGCAAGGCGAGCAAGATCAAGAAGAAGAAGGCGGCGGCCACCTGGCCATCGTCGTCGGCGTCGGCGTCGACGTC
GGCGTCGAAGGGGAGGGTGTGGGGCGGGCTCGGCGACGCGGCGGAGATGCAGCGGCGGCGGAGGGTGGCCGGCTACCGGG
TGTACGGCGTGGAGGGGAAGGTGAAGGTGTCGCTCCAGAGCAGCATGCGGTGGATCAAGGGCAAGTGCACCCGCGTGGTG
GACGGCTGGTGGTAATAAGCTCATGCTGCTGCCTGCTGCTGCTGCTGATGATGATGATGATGAATTGGTGGTGATCACTG
ATCACTACTCATCAGATTATTATTCAGATATCACTTATCATCAGAGTTGTCAAGAGATTAAAATAAGTTTATGAAGAAAA
AGATTCAGATAAGTGTTTGTGTTTTCTTCTCCTGATCTCCTCCATATGCAGCTCGGCTGCAGTAATCTGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis