Browse Element(s) Details


OsAffx.15785.1.S1_at

Description tigr:9634.m03505
TID=OsAffx.15785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pyridoxal-phosphate dependent enzyme
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3685010/11Pyridoxal-phosphate dependent enzyme family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36810Os.55116.1.S1_at11/116+21684270..21685013expressed protein
LOC_Os06g36820OsAffx.27968.1.S1_at1/116+21691503..21691822Cysteine synthase, putative
LOC_Os06g36830OsAffx.27968.1.S1_at7/116+21694605..21698564Pyridoxal-phosphate dependent enzyme family protein
LOC_Os06g36840Os.2259.1.S1_at11/116+21699487..21702433Cysteine synthase, putative, expressed
LOC_Os06g36840Os.2259.1.S1_s_at11/116+21699487..21702433Cysteine synthase, putative, expressed
LOC_Os06g36850OsAffx.15785.1.S1_at10/116+21707954..21713109Pyridoxal-phosphate dependent enzyme family protein
LOC_Os06g36859NANA6+21720468..21721811transposon protein, putative, Pong sub-class
LOC_Os06g36870NANA6+21722223..21724393transposon protein, putative, Pong sub-class
LOC_Os06g36880Os.53027.1.S1_at11/116+21729405..21732640Cysteine synthase, putative, expressed
LOC_Os06g36890Os.49494.1.S1_at1/116+21734128..21738841Glycosyl transferase, putative

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Gene Ontology Classification
GO idTypeName
GO:0019344biological_processcysteine biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0009536cellular_componentplastid
GO:0004124molecular_functioncysteine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15785.1.S1_at--99--5231NONE
GAATAACTGAAGGTCCATATAGGAA
NONE
OsAffx.15785.1.S1_at--409--5391Chr06:21709526..21709550 (25 bp)
GAAGCAAACGTAGAGGCACATTATA
LOC_Os06g36850
OsAffx.15785.1.S1_at--671--2071Chr06:21709226..21709533 (25 bp)
ACATTATAAGTGGACAGGACCTGAA
LOC_Os06g36850
OsAffx.15785.1.S1_at--654--171Chr06:21709171..21709195 (25 bp)
ATTTTTGTGACGTCTGTCGGTTCAG
LOC_Os06g36850
OsAffx.15785.1.S1_at--456--6391Chr06:21709091..21709115 (25 bp)
GATAGTCGCCGTGGAACCTGCGGAA
LOC_Os06g36850
OsAffx.15785.1.S1_at--832--8411Chr06:21709080..21709104 (25 bp)
TGGAACCTGCGGAAAGCCCCGTACT
LOC_Os06g36850
OsAffx.15785.1.S1_at--935--1651Chr06:21708939..21709090 (25 bp)
AGCCCCGTACTGTCAGGTGGCAAAG
LOC_Os06g36850
OsAffx.15785.1.S1_at--776--3411Chr06:21708913..21708937 (25 bp)
CAGCAAGCACAGGATCCAGGGCATA
LOC_Os06g36850
OsAffx.15785.1.S1_at--594--2371Chr06:21708852..21708876 (25 bp)
AAACCTATTATTACCTATGAAGTGA
LOC_Os06g36850
OsAffx.15785.1.S1_at--49--3631Chr06:21708765..21708789 (25 bp)
CTTGTTGGTATTTCTGCTGGCGCAA
LOC_Os06g36850
OsAffx.15785.1.S1_at--442--9491Chr06:21708753..21708777 (25 bp)
TCTGCTGGCGCAAATATAGCTGTTT
LOC_Os06g36850
Target Sequence 
GAATAACTGAAGGTCCATATAGGAATATGGAGAAAAAGGTGGAGGAACTTAAAAAAAGTATAAAAAATTCTTATAATCTT
GATCAGATGGTCAATGAAGCAAACGTAGAGGCACATTATAAGTGGACAGGACCTGAAATTTGGAAAGATACAGCAGGCAA
AGTGGATATTTTTGTGACGTCTGTCGGTTCAGGGGGCACATTAGCAGGAGTAGGAAAGTACCTAAAGGAGAAAAACCAAT
CTATAAGGATAGTCGCCGTGGAACCTGCGGAAAGCCCCGTACTGTCAGGTGGCAAAGCCAGCAAGCACAGGATCCAGGGC
ATAGGGGTGGGTTTTGAAACAGAAATTTTGAAGGCACATAAACCTATTATTACCTATGAAGTGAAGACAATATATAGTGA
GGATGCCATAACAAAAGCGAGGATGCTGGCCAGGGAGGAGGGGTTGCTTGTTGGTATTTCTGCTGGCGCAAATATAGCTG
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis