Browse Element(s) Details


Os.53027.1.S1_at

Description gb:AK070508.1
DB_XREF= gi:32980532
TID=Os.53027.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53027 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050D23, full insert sequence.
FL= gb:AK070508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3688011/11Cysteine synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36850OsAffx.15785.1.S1_at10/116+21707954..21713109Pyridoxal-phosphate dependent enzyme family protein
LOC_Os06g36859NANA6+21720468..21721811transposon protein, putative, Pong sub-class
LOC_Os06g36870NANA6+21722223..21724393transposon protein, putative, Pong sub-class
LOC_Os06g36880Os.53027.1.S1_at11/116+21729405..21732640Cysteine synthase, putative, expressed
LOC_Os06g36890Os.49494.1.S1_at1/116+21734128..21738841Glycosyl transferase, putative
LOC_Os06g36900OsAffx.31869.1.S1_at11/116+21740287..21741402retrotransposon protein, putative, unclassified
LOC_Os06g36900OsAffx.31869.5.S1_x_at4/116+21740287..21741402retrotransposon protein, putative, unclassified
LOC_Os06g36900OsAffx.31869.3.S1_s_at3/116+21740287..21741402retrotransposon protein, putative, unclassified
LOC_Os06g36900OsAffx.31869.4.S1_x_at1/116+21740287..21741402retrotransposon protein, putative, unclassified
LOC_Os06g36910OsAffx.15786.1.S1_at11/116+21749359..21751422Rf1 protein, mitochondrial precursor, putative
LOC_Os06g36920OsAffx.5033.1.S1_at11/116+21754621..21757567thromboxane-A synthase, putative, expressed
LOC_Os06g36920OsAffx.5032.1.S1_at7/116+21754621..21757567thromboxane-A synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006535biological_processcysteine biosynthesis from serine
GO:0019344biological_processcysteine biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004124molecular_functioncysteine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53027.1.S1_at--1071--6271Chr06:21729931..21729955 (25 bp)
GATGATTGTTACGATGTTCCCGAGT
LOC_Os06g36880
Os.53027.1.S1_at--630--3651Chr06:21729841..21729865 (25 bp)
CTTCTAATGTCTTGGTGCAGCTCTC
LOC_Os06g36880
Os.53027.1.S1_at--153--3311Chr06:21729776..21729800 (25 bp)
CACACGCTCCATTTTGCTATGTTTT
LOC_Os06g36880
Os.53027.1.S1_at--160--10411Chr06:21729711..21729735 (25 bp)
TTATTTCAGAAATCGATCCCGTAGA
LOC_Os06g36880
Os.53027.1.S1_at--283--6111Chr06:21729666..21729690 (25 bp)
GAGTGCTAATGCATCCAGGATCTTG
LOC_Os06g36880
Os.53027.1.S1_at--963--6611Chr06:21729639..21729663 (25 bp)
GTTGGGCGAGAACATCATTCCTGTG
LOC_Os06g36880
Os.53027.1.S1_at--266--7411Chr06:21729617..21729641 (25 bp)
GTGATTTTGGGCACCGAATAGTACA
LOC_Os06g36880
Os.53027.1.S1_at--180--331Chr06:21729563..21729587 (25 bp)
ATACTCCTGCAGTATTGCTGGGCTG
LOC_Os06g36880
Os.53027.1.S1_at--351--4731Chr06:21729547..21729571 (25 bp)
GCTGGGCTGGGCAAAGCTTTACAAT
LOC_Os06g36880
Os.53027.1.S1_at--604--10411Chr06:21729484..21729508 (25 bp)
TTATTGGTATGTTGCCAGTCGGCAT
LOC_Os06g36880
Os.53027.1.S1_at--194--8651Chr06:21729448..21729472 (25 bp)
TGGGCTTCAATCACTTTTGCAATTT
LOC_Os06g36880
Target Sequence 
GATGATTGTTACGATGTTCCCGAGTGGTGGTGAAAGATACATGAGCTCTGATCTCTTTGCAGATGTAAGGGAGGAATGTG
CTAATATGACCTTCTAATGTCTTGGTGCAGCTCTCCTTTGCTGTACTGCAAAGAGATTTGCTTCAGAATTCAGACCACAC
GCTCCATTTTGCTATGTTTTTCTTCTCCTTTCCTGTTTTGAGAACAAAAAAAATGCCATATTATTTCAGAAATCGATCCC
GTAGATTATGAAATTGGAAGCTCAAGAGTGCTAATGCATCCAGGATCTTGATGTTGGGCGAGAACATCATTCCTGTGATT
TTGGGCACCGAATAGTACAAGAAAGCCATAGTGTCTTTTGGAGATCCAATACTCCTGCAGTATTGCTGGGCTGGGCAAAG
CTTTACAATTCTAAGCTTGATGCATTGTTGTTTTAGTTATCTCTGAATTATTGGTATGTTGCCAGTCGGCATGTTCATTA
TTTTGGGCTTCAATCACTTTTGCAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis