Browse Element(s) Details


Os.10131.3.A1_at

Description gb:AK070317.1
DB_XREF= gi:32980341
TID=Os.10131.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsUGE-1 mRNA for UDP-glucose 4-epimerase, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023052A08, full insert sequence.
FL= gb:AK070317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5168011/11SCP-like extracellular protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51630Os.10391.1.S1_a_at11/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51630Os.2259.1.S1_s_at1/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51640Os.4803.1.S1_at11/115+29534432..29539656adhesion regulating molecule family, putative, expressed
LOC_Os05g51650Os.7005.1.S1_s_at11/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51650OsAffx.27407.1.S1_at10/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51660OsAffx.15200.4.A1_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51660Os.53200.1.S1_s_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51670Os.10131.1.S1_a_at11/115+29548701..29552580UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os05g51680Os.10131.4.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51680Os.10131.3.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51690Os.9713.2.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.9713.1.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.48625.1.A1_s_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51700Os.8524.1.S1_at11/115+29577307..29580245Nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10131.3.A1_at--677--9071Chr05:29552206..29552230 (25 bp)
TGCTACTGGAGGATTGGACGCCTAT
LOC_Os05g51680
Os.10131.3.A1_at--307--8111Chr05:29552191..29552215 (25 bp)
GGACGCCTATATTCAGCTGGATCAG
LOC_Os05g51680
Os.10131.3.A1_at--229--7951Chr05:29552173..29552197 (25 bp)
GGATCAGTTGCTACTGTCCGGCGAT
LOC_Os05g51680
Os.10131.3.A1_at--96--3171Chr05:29551973..29552144 (25 bp)
AATTCCACAGTTCCTTCTCAGCTTT
LOC_Os05g51680
Os.10131.3.A1_at--438--8911Chr05:29551941..29551965 (25 bp)
TGAGCGTAAACGATCTCGGCATCTC
LOC_Os05g51680
Os.10131.3.A1_at--37--3991Chr05:29551891..29551915 (25 bp)
CGGGATTTTCTGTTCAAGTTGGCAT
LOC_Os05g51680
Os.10131.3.A1_at--175--171Chr05:29551765..29551789 (25 bp)
GTTTACCTTTCCAGAAGCTTTCTCG
LOC_Os05g51680
Os.10131.3.A1_at--1070--1551Chr05:29551750..29551774 (25 bp)
AGCTTTCTCGAATGCTGCAACCATT
LOC_Os05g51680
Os.10131.3.A1_at--773--9011Chr05:29551735..29551759 (25 bp)
TGCAACCATTTCCAGCACAGATGTC
LOC_Os05g51680
Os.10131.3.A1_at--568--10271Chr05:29551707..29551731 (25 bp)
TTTCCAGTGCCCAGATTGTACACCT
LOC_Os05g51680
Os.10131.3.A1_at--1098--10791Chr05:29551692..29551716 (25 bp)
TTGTACACCTCACATCCTGGAAGAA
LOC_Os05g51680
Target Sequence 
TGCTACTGGAGGATTGGACGCCTATATTCAGCTGGATCAGTTGCTACTGTCCGGCGATCCATACCCGTAGGGGTTCTTGC
TCGCCCAATTCCACAGTTCCTTCTCAGCTTTGGCAGTTTGAGCGTAAACGATCTCGGCATCTCCAGGCCTTCGTCCAGCA
AATACAAGCGGGATTTTCTGTTCAAGTTGGCATTATTATTGTTAGGACGACATCATATGATCAACAAAAGCAAAGGACAA
GTTGGGAATTAATGATTATTATAGTAATTAAGAGGAAGTACACTTGTCCTGTTAGTTTACCTTTCCAGAAGCTTTCTCGA
ATGCTGCAACCATTTCCAGCACAGATGTCCCCTTTCCAGTGCCCAGATTGTACACCTCACATCCTGGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10131.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis