Browse Element(s) Details


Os.10131.1.S1_a_at

Description gb:AB087745.1
DB_XREF= gi:21715989
GEN=OsUGE-1
TID=Os.10131.1
CNT=91
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.10131 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsUGE-1 mRNA for UDP-glucose 4-epimerase, complete cds.
PROD=UDP-glucose 4-epimerase
FL= gb:AB087745.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5167011/11UDP-glucose 4-epimerase GEPI48, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51630Os.10391.1.S1_a_at11/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51630Os.2259.1.S1_s_at1/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51640Os.4803.1.S1_at11/115+29534432..29539656adhesion regulating molecule family, putative, expressed
LOC_Os05g51650Os.7005.1.S1_s_at11/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51650OsAffx.27407.1.S1_at10/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51660OsAffx.15200.4.A1_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51660Os.53200.1.S1_s_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51670Os.10131.1.S1_a_at11/115+29548701..29552580UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os05g51680Os.10131.4.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51680Os.10131.3.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51690Os.9713.2.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.9713.1.S1_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51690Os.48625.1.A1_s_at11/115+29573293..29577043CCT motif family protein, expressed
LOC_Os05g51700Os.8524.1.S1_at11/115+29577307..29580245Nucleoside diphosphate kinase 4, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0010053biological_processroot epidermal cell differentiation
GO:0046369biological_processgalactose biosynthesis
GO:0005829cellular_componentcytosol
GO:0003978molecular_functionUDP-glucose 4-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10131.1.S1_a_at--248--8111Chr05:29551734..29551758 (25 bp)
GGACATCTGTGCTGGAAATGGTTGC
LOC_Os05g51670
Os.10131.1.S1_a_at--48--7911Chr05:29551753..29551777 (25 bp)
GGTTGCAGCATTCGAGAAAGCTTCT
LOC_Os05g51670
Os.10131.1.S1_a_at--196--5511Chr05:29551906..29551930 (25 bp)
GAAAATCCCGCTTGTATTTGCTGGA
LOC_Os05g51670
Os.10131.1.S1_a_at--399--8771Chr05:29551918..29551942 (25 bp)
TGTATTTGCTGGACGAAGGCCTGGA
LOC_Os05g51670
Os.10131.1.S1_a_at--615--4231Chr05:29551947..29551971 (25 bp)
CCGAGATCGTTTACGCTCAAACTGC
LOC_Os05g51670
Os.10131.1.S1_a_at--329--6831Chr05:29551955..29551979 (25 bp)
GTTTACGCTCAAACTGCCAAAGCTG
LOC_Os05g51670
Os.10131.1.S1_a_at--1008--2371Chr05:29551965..29551989 (25 bp)
AAACTGCCAAAGCTGAGAAGGAACT
LOC_Os05g51670
Os.10131.1.S1_a_at--213--1771Chr05:29552133..29552157 (25 bp)
ACCTGTGGAATTGGGCGAGCAAGAA
LOC_Os05g51670
Os.10131.1.S1_a_at--993--5151Chr05:29552151..29552175 (25 bp)
GCAAGAACCCCTACGGGTATGGATC
LOC_Os05g51670
Os.10131.1.S1_a_at--420--10111Chr05:29552168..29552192 (25 bp)
TATGGATCGCCGGACAGTAGCAACT
LOC_Os05g51670
Os.10131.1.S1_a_at--781--3951Chr05:29552178..29552202 (25 bp)
CGGACAGTAGCAACTGATCCAGCTG
LOC_Os05g51670
Target Sequence 
GGACATCTGTGCTGGAAATGGTTGCAGCATTCGAGAAAGCTTCTGGAAAGAAAATCCCGCTTGTATTTGCTGGACGAAGG
CCTGGAGATGCCGAGATCGTTTACGCTCAAACTGCCAAAGCTGAGAAGGAACTGAAATGGAAGGCAAAATACGGGGTAGA
GGAGATGTGCAGGGACCTGTGGAATTGGGCGAGCAAGAACCCCTACGGGTATGGATCGCCGGACAGTAGCAACTGATCCA
GCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10131.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis