Browse Element(s) Details


Os.53200.1.S1_s_at

Description gb:AK071326.1
DB_XREF= gi:32981349
TID=Os.53200.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088B21, full insert sequence.
FL= gb:AK071326.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5166011/11SCP-like extracellular protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51620Os.19034.1.S1_at11/115+29512303..29518084expressed protein
LOC_Os05g51620Os.50278.2.S1_at1/115+29512303..29518084expressed protein
LOC_Os05g51630Os.10391.1.S1_a_at11/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51630Os.2259.1.S1_s_at1/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51640Os.4803.1.S1_at11/115+29534432..29539656adhesion regulating molecule family, putative, expressed
LOC_Os05g51650Os.7005.1.S1_s_at11/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51650OsAffx.27407.1.S1_at10/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51660OsAffx.15200.4.A1_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51660Os.53200.1.S1_s_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51670Os.10131.1.S1_a_at11/115+29548701..29552580UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os05g51680Os.10131.4.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51680Os.10131.3.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53200.1.S1_s_at--595--7651Chr05:29542272..29542296 (25 bp)
GGGAGTTCGTGGACGGCCACAACCA
LOC_Os05g51660
Os.53200.1.S1_s_at--365--3851Chr05:29542228..29542252 (25 bp)
CTGCAGCCGATGAGGTGGGATAACA
LOC_Os05g51660
Os.53200.1.S1_s_at--649--4511Chr05:29542123..29542147 (25 bp)
GCCGAGAGCCTCTACATCGGGAGGA
LOC_Os05g51660
Os.53200.1.S1_s_at--752--6171Chr05:29542051..29542075 (25 bp)
GAGGAGCACCTCTACGACAGGGACA
LOC_Os05g51660
Os.53200.1.S1_s_at--326--1851Chr05:29542038..29542062 (25 bp)
ACGACAGGGACACCGGCAAATGCAC
LOC_Os05g51660
Os.53200.1.S1_s_at--962--8591Chr05:29541972..29541996 (25 bp)
TGGTCAGGCCCAACTTCACCAGGAT
LOC_Os05g51660
Os.53200.1.S1_s_at--454--4074Chr03:10640490..10640514 (25 bp)
CGAGTGCTTCAACGGCGGCGTCTTC
NONE
Os.53200.1.S1_s_at--178--10531Chr05:29541910..29541934 (25 bp)
TTCATCACCTGCAACTACTTCAAAG
LOC_Os05g51660
Os.53200.1.S1_s_at--504--10511Chr05:29541892..29541916 (25 bp)
TTCAAAGACGAGCAGCACCAGCCGG
LOC_Os05g51660
Os.53200.1.S1_s_at--669--9912Chr05:29541853..29541877 (25 bp)
TACTCCTAATATGCTCTTCTTCTCT
LOC_Os05g51660
Os.53200.1.S1_s_at--322--9191Chr05:29541811..29541835 (25 bp)
TGCCTTCCTCATTCATGTACATTGA
LOC_Os05g51660
Target Sequence 
GGGAGTTCGTGGACGGCCACAACCAGCTGCGCGCGCGCTACGGGCTGCAGCCGATGAGGTGGGATAACAAGCTGGCGAGG
CAGGCGCGGCGGTGGTCCGACGCCATGCGCGGCGACTGCCAGATCCGCCACTCCACCGGCAACAGCTTCGCCGAGAGCCT
CTACATCGGGAGGAACGGCTGGAACGCCAGGGCTTCCGACGCCGTCCGATGCTGGGGCGACGAGGAGCACCTCTACGACA
GGGACACCGGCAAATGCACCGCCGGCGTCGACTTCCACGAGTGCGGCCACTTCGCCTTCATGGTCAGGCCCAACTTCACC
AGGATCGGCTGCGCCCGCGCCGAGTGCTTCAACGGCGGCGTCTTCATCACCTGCAACTACTTCAAAGACGAGCAGCACCA
GCCGGCTACCCCTCCCACCTACTCCTAATATGCTCTTCTTCTCTTCAACAACTGACCTGCCTGCCTTCCTCATTCATGTA
CATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53200.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis