Browse Element(s) Details


Os.50278.2.S1_at

Description gb:AK120505.1
DB_XREF= gi:37990128
TID=Os.50278.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123A20, full insert sequence.
FL= gb:AK120505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g516201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51560Os.21837.1.S1_at11/115+29487871..29492718Casein kinase I, delta isoform, putative, expressed
LOC_Os05g51570Os.50784.1.S1_at11/115+29495779..29497300Vacuolar processing enzyme precursor, putative, expressed
LOC_Os05g51580OsAffx.27406.1.S1_at11/115+29500557..29501019hypothetical protein
LOC_Os05g51590Os.10294.1.S1_at11/115+29501485..29502876B2 protein, putative, expressed
LOC_Os05g51610Os.27828.1.S1_a_at11/115+29505383..29510567Vacuolar cation/proton exchanger 1b, putative, expressed
LOC_Os05g51620Os.19034.1.S1_at11/115+29512303..29518084expressed protein
LOC_Os05g51620Os.50278.2.S1_at1/115+29512303..29518084expressed protein
LOC_Os05g51630Os.10391.1.S1_a_at11/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51630Os.2259.1.S1_s_at1/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51640Os.4803.1.S1_at11/115+29534432..29539656adhesion regulating molecule family, putative, expressed
LOC_Os05g51650Os.7005.1.S1_s_at11/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51650OsAffx.27407.1.S1_at10/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51660OsAffx.15200.4.A1_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51660Os.53200.1.S1_s_at11/115+29541501..29542508SCP-like extracellular protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50278.2.S1_at--1086--1951Chr02:300080..300104 (25 bp)
ACTGTGAATGAGGAGGAGCGCAACT
NONE
Os.50278.2.S1_at--192--991Chr02:300070..300094 (25 bp)
AGGAGGAGCGCAACTATCGCCGCAT
NONE
Os.50278.2.S1_at--540--9391Chr02:300032..300056 (25 bp)
TCGATCGTGTGAAGCTGAAGCATGG
NONE
Os.50278.2.S1_at--282--7651Chr02:299998..300022 (25 bp)
GGGAGGGCCCACATGTCTGTCTGCC
NONE
Os.50278.2.S1_at--300--771Chr02:299986..300010 (25 bp)
ATGTCTGTCTGCCACGTGTAGCACG
NONE
Os.50278.2.S1_at--875--7431Chr02:299971..299995 (25 bp)
GTGTAGCACGTAATCAGTCAATGGT
NONE
Os.50278.2.S1_at--1034--1151Chr02:299956..299980 (25 bp)
AGTCAATGGTCGTTTCCAACCAGCA
NONE
Os.50278.2.S1_at--54--1831Chr02:299932..299956 (25 bp)
ACGCCACGAGCACTCACGCAGAGTA
NONE
Os.50278.2.S1_at--175--5951Chr02:299925..299949 (25 bp)
GAGCACTCACGCAGAGTACTGATCC
NONE
Os.50278.2.S1_at--1131--1171Chr02:299885..299909 (25 bp)
AGTACTGTTTTAGCTTTATTCATGT
NONE
Os.50278.2.S1_at--786--30719Chr10:19648919..19648938 (20 bp)
AATAAGACGGATGGTTAAACTGCTT
NONE
Target Sequence 
ACTGTGAATGAGGAGGAGCGCAACTATCGCCGCATCTCCATCGATCGATCGATCGTGTGAAGCTGAAGCATGGAAGGGAG
TGGGGAGGGCCCACATGTCTGTCTGCCACGTGTAGCACGTAATCAGTCAATGGTCGTTTCCAACCAGCACGCCACGAGCA
CTCACGCAGAGTACTGATCCCTCCGTTCTAAAATAAGTACTGTTTTAGCTTTATTCATGTTTAACGTTTCACCGTTCGTC
TTATTTGAAAAAAGTTTATGATTAGTATTTTTGTTGTTATTAGATGATAAAATATAAATAGTACTTTATGTATGACTAAT
TTTTTTAATATTTTTTAAATAAGACGGATGGTTAAACTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50278.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis