Browse Element(s) Details


Os.27828.1.S1_a_at

Description gb:AK069021.1
DB_XREF= gi:32979045
TID=Os.27828.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129P04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170B16, full insert sequence.
FL= gb:AK069021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5161011/11Vacuolar cation/proton exchanger 1b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51560Os.21837.1.S1_at11/115+29487871..29492718Casein kinase I, delta isoform, putative, expressed
LOC_Os05g51570Os.50784.1.S1_at11/115+29495779..29497300Vacuolar processing enzyme precursor, putative, expressed
LOC_Os05g51580OsAffx.27406.1.S1_at11/115+29500557..29501019hypothetical protein
LOC_Os05g51590Os.10294.1.S1_at11/115+29501485..29502876B2 protein, putative, expressed
LOC_Os05g51610Os.27828.1.S1_a_at11/115+29505383..29510567Vacuolar cation/proton exchanger 1b, putative, expressed
LOC_Os05g51620Os.19034.1.S1_at11/115+29512303..29518084expressed protein
LOC_Os05g51620Os.50278.2.S1_at1/115+29512303..29518084expressed protein
LOC_Os05g51630Os.10391.1.S1_a_at11/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51630Os.2259.1.S1_s_at1/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51640Os.4803.1.S1_at11/115+29534432..29539656adhesion regulating molecule family, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006793biological_processphosphorus metabolism
GO:0006812biological_processcation transport
GO:0006816biological_processcalcium ion transport
GO:0006874biological_processcalcium ion homeostasis
GO:0006882biological_processzinc ion homeostasis
GO:0030026biological_processmanganese ion homeostasis
GO:0051592biological_processresponse to calcium ion
GO:0005774cellular_componentvacuolar membrane
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0015368molecular_functioncalcium:cation antiporter activity
GO:0015369molecular_functioncalcium:hydrogen antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27828.1.S1_a_at--894--10771Chr05:29506106..29506130 (25 bp)
TTGATTCTTGTCCTGTGCTACGCTG
LOC_Os05g51610
Os.27828.1.S1_a_at--325--9611Chr05:29506081..29506105 (25 bp)
TCATCAGCGTGTGCTTTTTCGTTAT
LOC_Os05g51610
Os.27828.1.S1_a_at--867--5751Chr05:29505884..29505908 (25 bp)
GACGGTGTTCACCATCTGGATGTGA
LOC_Os05g51610
Os.27828.1.S1_a_at--883--5531Chr05:29505821..29505845 (25 bp)
GAAACGTACGTACATGCGCCTAACA
LOC_Os05g51610
Os.27828.1.S1_a_at--586--7251Chr05:29505786..29505810 (25 bp)
GTCCGTACAGTACGTGCTAGCTACG
LOC_Os05g51610
Os.27828.1.S1_a_at--799--8031Chr05:29505762..29505786 (25 bp)
GGAGTACTCCTGTACACTACTGTAC
LOC_Os05g51610
Os.27828.1.S1_a_at--23--2031Chr05:29505747..29505771 (25 bp)
ACTACTGTACTACTGCTTGCACAAG
LOC_Os05g51610
Os.27828.1.S1_a_at--631--6391Chr05:29505715..29505739 (25 bp)
GATCGAGTACCGTAGCTAGCACAGG
LOC_Os05g51610
Os.27828.1.S1_a_at--924--5991Chr05:29505685..29505709 (25 bp)
GAGACGAGACGATCTGCTTGCTTGA
LOC_Os05g51610
Os.27828.1.S1_a_at--865--251Chr05:29505589..29505613 (25 bp)
ATAGAGGATGATACCACGACCCAAC
LOC_Os05g51610
Os.27828.1.S1_a_at--822--4271Chr05:29505556..29505580 (25 bp)
CCTGCAATTGGCTGGTTTGGTCATT
LOC_Os05g51610
Target Sequence 
TTGATTCTTGTCCTGTGCTACGCTGTCATCAGCGTGTGCTTTTTCGTTATAAGACGGCGTTCTGCAGGAGGGACGGACGG
TGTTCACCATCTGGATGTGATTGTGTAGCAAATTACTAACAGGCAGACCGCAGAAGCAGAAACGTACGTACATGCGCCTA
ACATATATATGGAGTCCGTACAGTACGTGCTAGCTACGGAGTACTCCTGTACACTACTGTACTACTGCTTGCACAAGAGA
AGAGGATCGAGTACCGTAGCTAGCACAGGCGGCGGAGACGAGACGATCTGCTTGCTTGAGGAGGCAGCCGATCGAAGCCG
GACTGGGCGGAGATCGATGCATGGATCCAGTTTGTTTAGACTGACGGACGATAGAGGATGATACCACGACCCAACCATCC
GTCCCTGCAATTGGCTGGTTTGGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27828.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis