Browse Element(s) Details


Os.21837.1.S1_at

Description gb:AK111911.1
DB_XREF= gi:37988574
TID=Os.21837.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-033-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124M05, full insert sequence.
FL= gb:AK111994.1 gb:AK111911.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5156011/11Casein kinase I, delta isoform, putative, expressed
LOC_Os07g378901/11protein phosphatase 2C family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51520Os.27568.1.S1_at11/115+29461830..29463367expressed protein
LOC_Os05g51530Os.15057.1.S1_at11/115+29464179..29468393Vacuolar ATP synthase subunit C, putative, expressed
LOC_Os05g51540Os.14691.1.S1_at11/115+29469257..29470753expressed protein
LOC_Os05g51550OsAffx.15198.1.S1_x_at11/115+29471513..29476608expressed protein
LOC_Os05g51550Os.54721.1.A1_at10/115+29471513..29476608expressed protein
LOC_Os05g51560Os.21837.1.S1_at11/115+29487871..29492718Casein kinase I, delta isoform, putative, expressed
LOC_Os05g51570Os.50784.1.S1_at11/115+29495779..29497300Vacuolar processing enzyme precursor, putative, expressed
LOC_Os05g51580OsAffx.27406.1.S1_at11/115+29500557..29501019hypothetical protein
LOC_Os05g51590Os.10294.1.S1_at11/115+29501485..29502876B2 protein, putative, expressed
LOC_Os05g51610Os.27828.1.S1_a_at11/115+29505383..29510567Vacuolar cation/proton exchanger 1b, putative, expressed
LOC_Os05g51620Os.19034.1.S1_at11/115+29512303..29518084expressed protein
LOC_Os05g51620Os.50278.2.S1_at1/115+29512303..29518084expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009506cellular_componentplasmodesma
GO:0004680molecular_functioncasein kinase activity
GO:0004681molecular_functioncasein kinase I activity
GO:0015071molecular_functionprotein phosphatase type 2C activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21837.1.S1_at--26--4991Chr05:29488447..29488471 (25 bp)
GCATCCAGGGCCTAAATTTCGATGG
LOC_Os05g51560
Os.21837.1.S1_at--180--7751Chr05:29488383..29488407 (25 bp)
GGTGTGCATATCATCAGAGCCCCTA
LOC_Os05g51560
Os.21837.1.S1_at--99--7091Chr05:29488350..29488374 (25 bp)
GTCACGCCTGCTGAAGTGGAGTACT
LOC_Os05g51560
Os.21837.1.S1_at--1116--10211Chr05:29488285..29488309 (25 bp)
TTTGGCCCTTAGCAACTGTTTGGTG
LOC_Os05g51560
Os.21837.1.S1_at--620--7511Chr05:29488263..29488287 (25 bp)
GTGGACTCATGGCAATGCTTAGGCT
LOC_Os05g51560
Os.21837.1.S1_at--1099--10411Chr05:29488245..29488269 (25 bp)
TTAGGCTGTTTGTACAGGTTCCCAT
LOC_Os05g51560
Os.21837.1.S1_at--455--1011Chr05:29488230..29488254 (25 bp)
AGGTTCCCATTTGTTTTCATTGCGC
LOC_Os05g51560
Os.21837.1.S1_at--1052--771Chr05:29488201..29488225 (25 bp)
ATGTGCCCCTTGAATCTTGTTGTAT
LOC_Os05g51560
Os.21837.1.S1_at--69--1272Chr07:22728413..22728432 (20 bp)
AGATTTCTGCATGCAGGGCTCTCAT
LOC_Os07g37890
Os.21837.1.S1_at--505--1051Chr05:29488061..29488085 (25 bp)
AGGTGTCCAGCCTCTTGTAACTTAT
LOC_Os05g51560
Os.21837.1.S1_at--446--2891Chr05:29488011..29488035 (25 bp)
AAGGGTTATGTATGCTGTTTGTCAC
LOC_Os05g51560
Target Sequence 
GCATCCAGGGCCTAAATTTCGATGGCGATGATAGGATTCAGTACTAGTATGTCTCAATCTNGGCGGTGTGCATATCATCA
GAGCCCCTACTCCATGNGTCACGCCTGCTGAAGTGGAGTACTAAAGACCGGAAAATAAGAGGTTTGGTTGGTTCTAAGGG
GCTTTGGCCCTTAGCAACTGTTTGGTGGACTCATGGCAATGCTTAGGCTGTTTGTACAGGTTCCCATTTGTTTTCATTGC
GCGGACATGTGCCCCTTGAATCTTGTTGTATTTGGAGAGATTTCTGCATGCAGGGCTCTCATGCCATGTGCTTCTTTGGA
AACTGGAATTGGATGACCGGTGGGGGAAGTTGGGGGATGCTTTTTTAAAGTTTGAATATTAGGGAGAGGTGTCCAGCCTC
TTGTAACTTATGGACAAGGAAAACTGCTATGAGAAGAAGGGTTATGTATGCTGTTTGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis