Browse Element(s) Details


Os.15057.1.S1_at

Description gb:AK061855.1
DB_XREF= gi:32971873
TID=Os.15057.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.15057 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 22866 putative vacuolar ATP synthase subunit C mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F12, full insert sequence.
FL= gb:AK100119.1 gb:AK061855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5153011/11Vacuolar ATP synthase subunit C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51490Os.22562.1.S1_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51490OsAffx.27405.1.S1_x_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51500Os.12337.2.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.56152.1.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.12337.1.S1_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500OsAffx.29835.1.S1_x_at1/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51510Os.52518.1.S1_at10/115+29455174..29458747Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g51520Os.27568.1.S1_at11/115+29461830..29463367expressed protein
LOC_Os05g51530Os.15057.1.S1_at11/115+29464179..29468393Vacuolar ATP synthase subunit C, putative, expressed
LOC_Os05g51540Os.14691.1.S1_at11/115+29469257..29470753expressed protein
LOC_Os05g51550OsAffx.15198.1.S1_x_at11/115+29471513..29476608expressed protein
LOC_Os05g51550Os.54721.1.A1_at10/115+29471513..29476608expressed protein
LOC_Os05g51560Os.21837.1.S1_at11/115+29487871..29492718Casein kinase I, delta isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0000221cellular_componenthydrogen-transporting ATPase V1 domain
GO:0005886cellular_componentplasma membrane
GO:0046961molecular_functionhydrogen-transporting ATPase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15057.1.S1_at--394--431Chr05:29464880..29464995 (25 bp)
ATCATTCCTGTCTGCTGTTCTAGCA
LOC_Os05g51530
Os.15057.1.S1_at--942--4731Chr05:29464867..29464891 (25 bp)
GCTGTTCTAGCACCTTCTCAAAAGG
LOC_Os05g51530
Os.15057.1.S1_at--986--4971Chr05:29464824..29464848 (25 bp)
GCATCCTGGAGGAACTCTGTGGCAA
LOC_Os05g51530
Os.15057.1.S1_at--896--1491Chr05:29464607..29464631 (25 bp)
AGCACAGTATGTTCCTTGCTACCTG
LOC_Os05g51530
Os.15057.1.S1_at--254--7411Chr05:29464500..29464524 (25 bp)
GTGATACGTCAATTCTTTCTTGATT
LOC_Os05g51530
Os.15057.1.S1_at--819--10551Chr05:29464484..29464508 (25 bp)
TTCTTGATTTATTTACCCAGCTTAT
LOC_Os05g51530
Os.15057.1.S1_at--1031--5431Chr05:29464415..29464439 (25 bp)
GAACCTGGACTATTTTCCTGGCACA
LOC_Os05g51530
Os.15057.1.S1_at--654--8771Chr05:29464380..29464404 (25 bp)
TGTTTGGACTATTTTATCCCCGGCA
LOC_Os05g51530
Os.15057.1.S1_at--4--10351Chr05:29464368..29464392 (25 bp)
TTTATCCCCGGCAACTACAATATTC
LOC_Os05g51530
Os.15057.1.S1_at--531--2231Chr05:29464352..29464376 (25 bp)
ACAATATTCCAACTGTTTCCTTTAG
LOC_Os05g51530
Os.15057.1.S1_at--1012--2031Chr05:29464269..29464293 (25 bp)
ACTTTGAGCAGCCAGGTTCGTAATA
LOC_Os05g51530
Target Sequence 
ATCATTCCTGTCTGCTGTTCTAGCACCTTCTCAAAAGGGTGAAAAGAAAGTAAGGAGCATCCTGGAGGAACTCTGTGGCA
ATGTCCATAGTATTTACTGGAAATCTGAAGACGATGTTGGTGTAGCTGGTCTGGGAGGTGAAACCGAGGCTCACCCCTAT
GTTTCCTTCACAATAAATTTTATCTGAGCACAGTATGTTCCTTGCTACCTGTGGCCAGGCAAGGCAGTGTTTTGGAGTAA
TTACTACTTTGGCAAACAAAAAACCAGCGAATGGTTCGGTGTATATTATAATTGTGATACGTCAATTCTTTCTTGATTTA
TTTACCCAGCTTATATGATCCTGTAGTTTGAACCGATCAATAATGTAGCTTTTTGGGGGAACCTGGACTATTTTCCTGGC
ACAATAGGGTATCTGTTTGGACTATTTTATCCCCGGCAACTACAATATTCCAACTGTTTCCTTTAGTATATCTATTGTGC
TTTGAGAGCACCGTGTAAGATGTTGTGGATATTATGTTTTTGTAACTTTGAGCAGCCAGGTTCGTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis