Browse Element(s) Details


OsAffx.27405.1.S1_x_at

Description tigr:9633.m04858
TID=OsAffx.27405.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CPSF A subunit region, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5149011/11SIT4 phosphatase-associated family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51440OsAffx.15197.1.S1_at11/115+29411340..29412432Hsp20/alpha crystallin family protein
LOC_Os05g51450Os.12065.1.S1_at11/115+29412546..29416205ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os05g51460OsAffx.3605.1.S1_at1/115+29419310..29420718retrotransposon protein, putative, LINE subclass
LOC_Os05g51470Os.47949.1.S1_a_at11/115+29423748..29426700expressed protein
LOC_Os05g51480Os.419.1.S1_at11/115+29428627..29436780DNA damage binding protein 1a, putative, expressed
LOC_Os05g51490Os.22562.1.S1_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51490OsAffx.27405.1.S1_x_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51500Os.12337.2.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.56152.1.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.12337.1.S1_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500OsAffx.29835.1.S1_x_at1/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51510Os.52518.1.S1_at10/115+29455174..29458747Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g51520Os.27568.1.S1_at11/115+29461830..29463367expressed protein
LOC_Os05g51530Os.15057.1.S1_at11/115+29464179..29468393Vacuolar ATP synthase subunit C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27405.1.S1_x_at--846--1571Chr05:29442984..29443008 (25 bp)
AGCTCCCTCTTTACGAATTCAAACT
LOC_Os05g51490
OsAffx.27405.1.S1_x_at--1113--331Chr05:29443035..29443059 (25 bp)
ATAAATGACCGTTTAGCTGCCTCTG
LOC_Os05g51490
OsAffx.27405.1.S1_x_at--260--8891Chr05:29443130..29443154 (25 bp)
TGAGGACACTAGCATCGAGCCACAA
LOC_Os05g51490
OsAffx.27405.1.S1_x_at--123--4411Chr05:29443148..29443172 (25 bp)
GCCACAACTGGAAAGTGTCTCTCTT
LOC_Os05g51490
OsAffx.27405.1.S1_x_at--1071--7151Chr05:29443164..29443188 (25 bp)
GTCTCTCTTGAAAATGGCCCTGTTG
LOC_Os05g51490
OsAffx.27405.1.S1_x_at--538--5251Chr05:29443293..29443317 (25 bp)
GAATCTGAGCGACACGTGGATGTTC
LOC_Os05g51490
OsAffx.27405.1.S1_x_at--1016--5011Chr05:29443389..29443413 (25 bp)
GCAGTGGATGAACCTGTCAGCCCAT
LOC_Os05g51490
OsAffx.27405.1.S1_x_at--30--431Chr05:29443412..29443436 (25 bp)
ATCATCTGAGCCCAACAATGCTTCG
LOC_Os05g51490
OsAffx.27405.1.S1_x_at--624--3011Chr05:29443428..29443452 (25 bp)
AATGCTTCGGCTGGAGCTTCACCAG
LOC_Os05g51490
OsAffx.27405.1.S1_x_at--971--7751Chr05:29443458..29443482 (25 bp)
GGTGATATCCATACTGCTGGCTCAA
LOC_Os05g51490
OsAffx.27405.1.S1_x_at--822--4711Chr05:29443473..29443497 (25 bp)
GCTGGCTCAACTGGATCCAACGATT
LOC_Os05g51490
Target Sequence 
AGCTCCCTCTTTACGAATTCAAACTGGTTTACCTTTGATGGTGATAGAGGAATAAATGACCGTTTAGCTGCCTCTGTCCC
TTCTTCATCTCCCAATTCTGAAGAAACTTCTCTAAACACGGAGGAAACTGATGAGGTGCAAATTGGTGAGGACACTAGCA
TCGAGCCACAACTGGAAAGTGTCTCTCTTGAAAATGGCCCTGTTGAGGAGGCCGGGGACTTAGCAGATGTAAGTAAACAA
ACAGATTCTAACACGGAAGACGAGAAACTATTGTGCACTGAAGAGGAAGATTTGTCCAAAGAAGCTGAAGAATCTGAGCG
ACACGTGGATGTTCGAGATGGCCAGGTAGACATACAGGCAGAAGATGCAGCTGAAGGATCATGCGGGGATATGGGTACAG
GGATAGCAGTGGATGAACCTGTCAGCCCATCATCTGAGCCCAACAATGCTTCGGCTGGAGCTTCACCAGACACAGGTGAT
ATCCATACTGCTGGCTCAACTGGATCCAACGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27405.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis