Browse Element(s) Details


Os.22562.1.S1_at

Description gb:AK099566.1
DB_XREF= gi:32984775
TID=Os.22562.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22562 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034M16, full insert sequence.
FL= gb:AK071878.1 gb:AK099566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5149011/11SIT4 phosphatase-associated family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51440OsAffx.15197.1.S1_at11/115+29411340..29412432Hsp20/alpha crystallin family protein
LOC_Os05g51450Os.12065.1.S1_at11/115+29412546..29416205ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os05g51460OsAffx.3605.1.S1_at1/115+29419310..29420718retrotransposon protein, putative, LINE subclass
LOC_Os05g51470Os.47949.1.S1_a_at11/115+29423748..29426700expressed protein
LOC_Os05g51480Os.419.1.S1_at11/115+29428627..29436780DNA damage binding protein 1a, putative, expressed
LOC_Os05g51490Os.22562.1.S1_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51490OsAffx.27405.1.S1_x_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51500Os.12337.2.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.56152.1.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.12337.1.S1_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500OsAffx.29835.1.S1_x_at1/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51510Os.52518.1.S1_at10/115+29455174..29458747Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g51520Os.27568.1.S1_at11/115+29461830..29463367expressed protein
LOC_Os05g51530Os.15057.1.S1_at11/115+29464179..29468393Vacuolar ATP synthase subunit C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.22562.1.S1_at--465--7811Chr05:29443646..29443670 (25 bp)
GGTAGTACTCATGCCAAAGTCCCTA
LOC_Os05g51490
Os.22562.1.S1_at--971--3691Chr05:29443668..29443692 (25 bp)
CTAACCTCACATCTTGGCAATCATG
LOC_Os05g51490
Os.22562.1.S1_at--745--2351Chr05:29443729..29443753 (25 bp)
AAAGCTTTTGCTATCTGCAGTTGCA
LOC_Os05g51490
Os.22562.1.S1_at--360--1291Chr05:29443801..29443825 (25 bp)
AGATGCCTTGTCCTCAATTTGCATG
LOC_Os05g51490
Os.22562.1.S1_at--941--151Chr05:29443817..29443841 (25 bp)
ATTTGCATGGGACTCGTACCACGTA
LOC_Os05g51490
Os.22562.1.S1_at--518--10371Chr05:29443864..29443888 (25 bp)
TTTTTTGTTCAGACCTCACCTCAAT
LOC_Os05g51490
Os.22562.1.S1_at--1109--8851Chr05:29443902..29443926 (25 bp)
TGATGATCCGTTTCAGCTGGTTTTG
LOC_Os05g51490
Os.22562.1.S1_at--1003--10811Chr05:29443940..29443964 (25 bp)
TTGTCTTGTTTCTTACGCTAGGGCA
LOC_Os05g51490
Os.22562.1.S1_at--896--7591Chr05:29443960..29443984 (25 bp)
GGGCACTCGAACTGTAGCATTGGCA
LOC_Os05g51490
Os.22562.1.S1_at--571--4911Chr05:29443976..29444000 (25 bp)
GCATTGGCAGTGAGTTTTTTCCCTT
LOC_Os05g51490
Os.22562.1.S1_at--13--1111Chr05:29444104..29444128 (25 bp)
AGTGGATTCTATTCCCATCGACGAT
LOC_Os05g51490
Target Sequence
GGTAGTACTCATGCCAAAGTCCCTAACCTCACATCTTGGCAATCATGGAGAAATCAGAAGCAATGAGTGCTGTGCAACAA
CATAAAGCTTTTGCTATCTGCAGTTGCAATTTGCAAACGAGCACTTCCATATGCCGACTGTCTCACCTCATCTCCAGATG
CCTTGTCCTCAATTTGCATGGGACTCGTACCACGTAATGGTGGGAAAGTTGGTTTTCCTTTTTTGTTCAGACCTCACCTC
AATNGGTGGTAGCTTTTGATGATCCGTTTCAGCTGGTTTTGGCTACGTTGGTATTTGTCTTGTTTCTTACGCTAGGGCAC
TCGAACTGTAGCATTGGCAGTGAGTTTTTTCCCTTGTTTCTTTTAAATTGGATTAGCTATCTCTGTATTGCTTAAGAGAA
ACATACGGCTGGCTTTTTCTCTAGTTAAATTAAGAGTATATTTGTTCTTCNNNNNNNNAGTGGATTCTATTCCCATCGAC
GAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis