Browse Element(s) Details


Os.27568.1.S1_at

Description gb:AK064253.1
DB_XREF= gi:32974271
TID=Os.27568.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-C07, full insert sequence.
FL= gb:AK064253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5152011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51490Os.22562.1.S1_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51490OsAffx.27405.1.S1_x_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51500Os.12337.2.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.56152.1.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.12337.1.S1_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500OsAffx.29835.1.S1_x_at1/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51510Os.52518.1.S1_at10/115+29455174..29458747Protein phosphatase 2C ABI2, putative, expressed
LOC_Os05g51520Os.27568.1.S1_at11/115+29461830..29463367expressed protein
LOC_Os05g51530Os.15057.1.S1_at11/115+29464179..29468393Vacuolar ATP synthase subunit C, putative, expressed
LOC_Os05g51540Os.14691.1.S1_at11/115+29469257..29470753expressed protein
LOC_Os05g51550OsAffx.15198.1.S1_x_at11/115+29471513..29476608expressed protein
LOC_Os05g51550Os.54721.1.A1_at10/115+29471513..29476608expressed protein
LOC_Os05g51560Os.21837.1.S1_at11/115+29487871..29492718Casein kinase I, delta isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27568.1.S1_at--679--1571Chr05:29462382..29462406 (25 bp)
AGCTACCCGCTGACGGAGTGGATGC
LOC_Os05g51520
Os.27568.1.S1_at--1006--5731Chr05:29462371..29462395 (25 bp)
GACGGAGTGGATGCTGGTCCCCTAC
LOC_Os05g51520
Os.27568.1.S1_at--177--6191Chr05:29462100..29462124 (25 bp)
GAGGACGACACCGTGCTTGTGCAGT
LOC_Os05g51520
Os.27568.1.S1_at--380--9051Chr05:29462081..29462105 (25 bp)
TGCAGTCGGAGTCCGCCAACAAGGT
LOC_Os05g51520
Os.27568.1.S1_at--78--1811Chr05:29462010..29462034 (25 bp)
ACCGCCTTCTTCTGATCATTTCGAT
LOC_Os05g51520
Os.27568.1.S1_at--84--8771Chr05:29461998..29462022 (25 bp)
TGATCATTTCGATTTCCGTCCCAAT
LOC_Os05g51520
Os.27568.1.S1_at--90--9331Chr05:29461980..29462004 (25 bp)
TCCCAATCTGCACTACAAACACTGT
LOC_Os05g51520
Os.27568.1.S1_at--384--2471Chr05:29461963..29461987 (25 bp)
AACACTGTATTGAGGTTTCCCTCCT
LOC_Os05g51520
Os.27568.1.S1_at--797--2291Chr05:29461862..29461886 (25 bp)
AAATGTGATGCTTTGCCCTCCTCGT
LOC_Os05g51520
Os.27568.1.S1_at--1146--4531Chr05:29461848..29461872 (25 bp)
GCCCTCCTCGTTAATAAATCACTGG
LOC_Os05g51520
Os.27568.1.S1_at--1119--371Chr05:29461831..29461855 (25 bp)
ATCACTGGAATACATCGCTTCGTTT
LOC_Os05g51520
Target Sequence 
AGCTACCCGCTGACGGAGTGGATGCTGGTCCCCTACGCGCAGCGCAACCTGACGTGGACGCAGCACGCCTTCAACGAGAA
GGTGGGCGAGGTCCGGCGCGTGGCCACGGAGGCGTTCGTCCGCCTCAAGGGGCGGTGGGCGTGCCTGCAGAAGCGCACGG
AGGTGAAGCTGCAGGACCTCCCCGCGGTGCTCGCCGCCTGCTGCGTCCTCCACAACATCTGCGAGACCAGGGGGGAGGAC
ATGGACCCCGACCTCCGCTGCGACCTCCCCCCCGACGAGGAGGAGGACGACACCGTGCTTGTGCAGTCGGAGTCCGCCAA
CAAGGTGAGGGACGACATCGCGCACAACCTCCTCCACCGCGGATTGGCCGGCACCGCCTTCTTCTGATCATTTCGATTTC
CGTCCCAATCTGCACTACAAACACTGTATTGAGGTTTCCCTCCTCCCCTCCTGTTTGTTCTTGTTATTGCTATAGATTAG
TTTAGGTGCTCCACTCAACNACAACAATAACACAAGATTGAAATGTGATGCTTTGCCCTCCTCGTTAATAAATCACTGGA
ATACATCGCTTCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis