Browse Element(s) Details


Os.12065.1.S1_at

Description gb:AK071333.1
DB_XREF= gi:32981356
TID=Os.12065.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12065 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023091K09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091K09, full insert sequence.
FL= gb:AK071333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5145011/11ATP-dependent Clp protease proteolytic subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51390OsAffx.15193.1.S1_at11/115+29387196..29390727Lysine Decarboxylase, putative, expressed
LOC_Os05g51400OsAffx.15194.1.S1_at11/115+29397661..29401826serine/threonine protein kinase, putative
LOC_Os05g51420Os.9473.2.S1_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.1.S1_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51410OsAffx.15195.1.S1_at11/115+29405111..29409102expressed protein
LOC_Os05g51430OsAffx.15196.1.S1_at11/115+29409666..29410202hypothetical protein
LOC_Os05g51440OsAffx.15197.1.S1_at11/115+29411340..29412432Hsp20/alpha crystallin family protein
LOC_Os05g51450Os.12065.1.S1_at11/115+29412546..29416205ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os05g51460OsAffx.3605.1.S1_at1/115+29419310..29420718retrotransposon protein, putative, LINE subclass
LOC_Os05g51470Os.47949.1.S1_a_at11/115+29423748..29426700expressed protein
LOC_Os05g51480Os.419.1.S1_at11/115+29428627..29436780DNA damage binding protein 1a, putative, expressed
LOC_Os05g51490Os.22562.1.S1_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51490OsAffx.27405.1.S1_x_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12065.1.S1_at--448--3071Chr05:29413166..29413190 (25 bp)
AATCTTGCACTCTTTGGATGGTTCC
LOC_Os05g51450
Os.12065.1.S1_at--591--2631Chr05:29413054..29413161 (25 bp)
AACCAAAGGATCTGACCGCGCAGTT
LOC_Os05g51450
Os.12065.1.S1_at--520--5891Chr05:29412982..29413006 (25 bp)
GAGCTGGGCGATGGTCAACTCCAAG
LOC_Os05g51450
Os.12065.1.S1_at--198--7091Chr05:29412969..29412993 (25 bp)
GTCAACTCCAAGTGTCCCTAGATAG
LOC_Os05g51450
Os.12065.1.S1_at--6--1891Chr05:29412903..29412927 (25 bp)
ACGATGATACGCGTGGTTGTCCTAT
LOC_Os05g51450
Os.12065.1.S1_at--1143--7911Chr05:29412889..29412913 (25 bp)
GGTTGTCCTATTCAGAGCAGCCTAC
LOC_Os05g51450
Os.12065.1.S1_at--1033--5071Chr05:29412873..29412897 (25 bp)
GCAGCCTACCTGTTACATTTGCATG
LOC_Os05g51450
Os.12065.1.S1_at--867--2571Chr05:29412802..29412826 (25 bp)
AACGTTGCTTACTGCAGTGGCTTTT
LOC_Os05g51450
Os.12065.1.S1_at--264--271Chr05:29412747..29412771 (25 bp)
ATATGTAGTTTATGCTGCCTTCCTG
LOC_Os05g51450
Os.12065.1.S1_at--59--7071Chr05:29412678..29412702 (25 bp)
GTAATCCAGTAATCCATGTGACCAA
LOC_Os05g51450
Os.12065.1.S1_at--1041--10551Chr05:29412647..29412671 (25 bp)
TTCTTATTCATGTGTTGGCTCTGCA
LOC_Os05g51450
Target Sequence 
AATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAAT
CGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAAC
CATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGA
AGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCA
TCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCANTAGTGG
AGATGGTAATCCAGTAATCCATGTGACCAAGTATTCTTCTTATTCATGTGTTGGCTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12065.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis