Browse Element(s) Details


OsAffx.15194.1.S1_at

Description tigr:9633.m04848
TID=OsAffx.15194.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to serinethreonine protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5140011/11serine/threonine protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51360Os.50191.1.S1_at10/115+29372287..29373866dnaK protein, expressed
LOC_Os05g51370OsAffx.4684.1.S1_at11/115+29374916..29375964hypothetical protein
LOC_Os05g51380Os.38282.1.S1_at11/115+29376716..29381572expressed protein
LOC_Os05g51380Os.51194.1.A1_x_at1/115+29376716..29381572expressed protein
LOC_Os05g51380Os.18659.1.S1_s_at1/115+29376716..29381572expressed protein
LOC_Os05g51390OsAffx.15193.1.S1_at11/115+29387196..29390727Lysine Decarboxylase, putative, expressed
LOC_Os05g51400OsAffx.15194.1.S1_at11/115+29397661..29401826serine/threonine protein kinase, putative
LOC_Os05g51420Os.9473.2.S1_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.1.S1_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51410OsAffx.15195.1.S1_at11/115+29405111..29409102expressed protein
LOC_Os05g51430OsAffx.15196.1.S1_at11/115+29409666..29410202hypothetical protein
LOC_Os05g51440OsAffx.15197.1.S1_at11/115+29411340..29412432Hsp20/alpha crystallin family protein
LOC_Os05g51450Os.12065.1.S1_at11/115+29412546..29416205ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os05g51460OsAffx.3605.1.S1_at1/115+29419310..29420718retrotransposon protein, putative, LINE subclass
LOC_Os05g51470Os.47949.1.S1_a_at11/115+29423748..29426700expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15194.1.S1_at--738--8631Chr05:29400926..29400950 (25 bp)
TGGGTTTGCTAGAGATGGTCCTGTT
LOC_Os05g51400
OsAffx.15194.1.S1_at--846--7251Chr05:29400943..29400967 (25 bp)
GTCCTGTTGGTGATATGGCCCATGT
LOC_Os05g51400
OsAffx.15194.1.S1_at--934--771Chr05:29400964..29400988 (25 bp)
ATGTGTCCACCCGAGTGTTAGGAAC
LOC_Os05g51400
OsAffx.15194.1.S1_at--103--5071Chr05:29400999..29401023 (25 bp)
GCAGCTCCTGAGTACGTGTTGACAG
LOC_Os05g51400
OsAffx.15194.1.S1_at--62--5171Chr05:29401425..29401449 (25 bp)
GCAATGGAGCGGAACCTGGTTGAAT
LOC_Os05g51400
OsAffx.15194.1.S1_at--207--5291Chr05:29401446..29401470 (25 bp)
GAATGGGCTCACAACAACGCCAACG
LOC_Os05g51400
OsAffx.15194.1.S1_at--53--1891Chr05:29401468..29401492 (25 bp)
ACGATAGGAGCATCCACAGGCTGAT
LOC_Os05g51400
OsAffx.15194.1.S1_at--1007--2111Chr05:29401483..29401507 (25 bp)
ACAGGCTGATAGACCCCGGGCTCGG
LOC_Os05g51400
OsAffx.15194.1.S1_at--856--9211Chr05:29401518..29401542 (25 bp)
TCCATGGCGGGAGCCCAAATCCTGG
LOC_Os05g51400
OsAffx.15194.1.S1_at--1023--10731Chr05:29401559..29401583 (25 bp)
TTGCACCAGGCAGAATCCCAGGGAC
LOC_Os05g51400
OsAffx.15194.1.S1_at--116--4771Chr05:29401622..29401646 (25 bp)
GCTGCACACGGATCAGCGTGCCAAT
LOC_Os05g51400
Target Sequence 
TGGGTTTGCTAGAGATGGTCCTGTTGGTGATATGGCCCATGTGTCCACCCGAGTGTTAGGAACATATGGATATGCAGCTC
CTGAGTACGTGTTGACAGGCAAGAAGGCAATGGAGCGGAACCTGGTTGAATGGGCTCACAACAACGCCAACGATAGGAGC
ATCCACAGGCTGATAGACCCCGGGCTCGGGTCCAACTTCTCCATGGCGGGAGCCCAAATCCTGGCCCGCACGGCCCGTTC
TTGCACCAGGCAGAATCCCAGGGACAGGCCCCTGATGAGCGAGGTGGTGCACACACTGGAGACGCTGCACACGGATCAGC
GTGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis