Browse Element(s) Details


OsAffx.15193.1.S1_at

Description tigr:9633.m04847
TID=OsAffx.15193.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lysine decarboxylase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5139011/11Lysine Decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51340Os.26455.2.S1_s_at11/115+29362102..29363633hypothetical protein
LOC_Os05g51340OsAffx.15191.1.S1_at10/115+29362102..29363633hypothetical protein
LOC_Os05g51340OsAffx.32331.1.S1_x_at1/115+29362102..29363633hypothetical protein
LOC_Os05g51350OsAffx.15192.1.S1_at11/115+29365917..29367278Eukaryotic aspartyl protease family protein
LOC_Os05g51360Os.50191.1.S1_at10/115+29372287..29373866dnaK protein, expressed
LOC_Os05g51370OsAffx.4684.1.S1_at11/115+29374916..29375964hypothetical protein
LOC_Os05g51380Os.38282.1.S1_at11/115+29376716..29381572expressed protein
LOC_Os05g51380Os.51194.1.A1_x_at1/115+29376716..29381572expressed protein
LOC_Os05g51380Os.18659.1.S1_s_at1/115+29376716..29381572expressed protein
LOC_Os05g51390OsAffx.15193.1.S1_at11/115+29387196..29390727Lysine Decarboxylase, putative, expressed
LOC_Os05g51400OsAffx.15194.1.S1_at11/115+29397661..29401826serine/threonine protein kinase, putative
LOC_Os05g51420Os.9473.2.S1_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.1.S1_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51410OsAffx.15195.1.S1_at11/115+29405111..29409102expressed protein
LOC_Os05g51430OsAffx.15196.1.S1_at11/115+29409666..29410202hypothetical protein
LOC_Os05g51440OsAffx.15197.1.S1_at11/115+29411340..29412432Hsp20/alpha crystallin family protein
LOC_Os05g51450Os.12065.1.S1_at11/115+29412546..29416205ATP-dependent Clp protease proteolytic subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15193.1.S1_at--486--791Chr05:29387877..29387901 (25 bp)
ATGGGCCTGGTCTCGCATGCAGTTC
LOC_Os05g51390
OsAffx.15193.1.S1_at--887--1211Chr05:29389301..29389325 (25 bp)
AGTTAGAGCCGTTTCTGGTATGCAC
LOC_Os05g51390
OsAffx.15193.1.S1_at--955--1311Chr05:29389339..29389363 (25 bp)
AGATGGCTCGGTTTGCTGATGCTTT
LOC_Os05g51390
OsAffx.15193.1.S1_at--1069--6331Chr05:29389356..29389379 (24 bp)
GATGCTTTTATTGCTCTACCAGGTG
LOC_Os05g51390
OsAffx.15193.1.S1_at--313--4931Chr05:29389527..29389551 (25 bp)
GCTTGAGGTCATTACTTGGGCACAA
LOC_Os05g51390
OsAffx.15193.1.S1_at--801--5411Chr05:29389566..29389922 (25 bp)
GAAGCCGATATGGTTCACACTTTTT
LOC_Os05g51390
OsAffx.15193.1.S1_at--29--8031Chr05:29389956..29390320 (25 bp)
GGAGGATCTTATACTGTTGGTCTTT
LOC_Os05g51390
OsAffx.15193.1.S1_at--283--8811Chr05:29390325..29390349 (25 bp)
TGTTGACGGATTCTACAACCCTCTT
LOC_Os05g51390
OsAffx.15193.1.S1_at--441--10151Chr05:29390351..29390375 (25 bp)
TATCGTTTATCGACTTGGCTGTTAA
LOC_Os05g51390
OsAffx.15193.1.S1_at--127--9591Chr05:29390384..29390408 (25 bp)
TCATCACCGAGGAGGCTAGGCGCAT
LOC_Os05g51390
OsAffx.15193.1.S1_at--1142--751Chr05:29390630..29390654 (25 bp)
ATGTCCCCGAGTATAGCATTGGCTT
LOC_Os05g51390
Target Sequence 
ATGGGCCTGGTCTCGCATGCAGTTCATGCTGGAGGTCGCCATGTCATTGGGATCATTCCAAAATCTCTGATGCCCAGAGA
GGTAACTGGAGAACCTGTAGGGGAAGTTAGAGCCGTTTCTGGTATGCACGAGAGGAAGGCCGAGATGGCTCGGTTTGCTG
ATGCTTTTATTGCTCTACCAGGTGGCTATGGAACCTTGGAGGAGTTGCTTGAGGTCATTACTTGGGCACAACTTGGAATC
CATAAGAAGCCGATATGGTTCACACTTTTTGAATATTCTCAAACAGCTAATGGAATGGCGATTGGAGGATCTTATACTGT
TGGTCTTTTGAATGTTGACGGATTCTACAACCCTCTTCTATCGTTTATCGACTTGGCTGTTAATGAAGGCTTCATCACCG
AGGAGGCTAGGCGCATCATCATCTCCGCTCCAACAGCCAAGGAGCTAGTTATGAAATTGGAGGACTATGTCCCCGAGTAT
AGCATTGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis