Browse Element(s) Details


Os.51194.1.A1_x_at

Description gb:AK061509.1
DB_XREF= gi:32971527
TID=Os.51194.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-309-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-F08, full insert sequence.
FL= gb:AK061509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2891011/11LSD1 zinc finger family protein, expressed
LOC_Os02g563607/11expressed protein
LOC_Os05g513801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28880NANA7+16930487..16930939hypothetical protein
LOC_Os07g28890OsAffx.16462.1.S1_at11/117+16932069..16936913hypothetical protein
LOC_Os07g28900OsAffx.16463.1.S1_at11/117+16940491..16945138pentatricopeptide, putative, expressed
LOC_Os07g28910Os.51194.1.A1_x_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910Os.18659.1.S1_s_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.12663.1.S1_at7/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.11133.1.S1_at1/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28920Os.53096.1.S1_at11/117+16953997..16958742expressed protein
LOC_Os07g28930Os.8135.1.S1_at11/117+16965239..16968267Protein kinase domain containing protein, expressed
LOC_Os07g28930OsAffx.28653.1.S1_x_at9/117+16965239..16968267Protein kinase domain containing protein, expressed
LOC_Os07g28940Os.38150.1.A1_s_at9/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed
LOC_Os07g28940Os.11809.1.S1_at6/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006917biological_processinduction of apoptosis
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51194.1.A1_x_at--752--832Chr07:16950155..16950179 (25 bp)
ATGGAGCTCGATGCCACCAAGCAGC
LOC_Os07g28910
Os.51194.1.A1_x_at--1151--9791Chr07:16952341..16952365 (25 bp)
TAACCTGCTCATGTATCCAGCCGGA
LOC_Os07g28910
Os.51194.1.A1_x_at--984--10132Chr07:16952354..16952378 (25 bp)
TATCCAGCCGGAGCAACGTCGATTT
LOC_Os07g28910
Os.51194.1.A1_x_at--645--332Chr07:16952640..16952664 (25 bp)
ATACAAATGGCTTCAGGGCTCCGCA
LOC_Os07g28910
Os.51194.1.A1_x_at--299--7213Chr07:16952676..16952700 (25 bp)
GTCGCGTTGATGGTGCCTGCACTCA
LOC_Os07g28910
Os.51194.1.A1_x_at--922--1032Chr07:16952774..16952798 (25 bp)
AGGTCGCTCGAGAAGTACACACTGA
LOC_Os07g28910
Os.51194.1.A1_x_at--1131--9852Chr07:16952789..16952813 (25 bp)
TACACACTGAAGTTGCTCTGGTCAT
LOC_Os07g28910
Os.51194.1.A1_x_at--817--10832Chr07:16952824..16952848 (25 bp)
TTGTGTGTAACTCTTCCTGGTTTGC
LOC_Os07g28910
Os.51194.1.A1_x_at--661--8571Chr07:16952841..16952865 (25 bp)
TGGTTTGCTTTTCAGTCTAGGATAG
LOC_Os07g28910
Os.51194.1.A1_x_at--444--6372Chr07:16952947..16952971 (25 bp)
GATCCATGTCATTTGCTGTCAGAAT
LOC_Os07g28910
Os.51194.1.A1_x_at--694--10192Chr07:16953086..16953110 (25 bp)
TATTTTATACACTACTTTCTCCCTC
LOC_Os07g28910
Target Sequence 
ATGGAGCTCGATGCCACCAAGCAGCCATTCCCTGGGGGCCCAAAGCCAGCTCGTCTGCTCTGGGTGCCGTAACCTGCTCA
TGTATCCAGCCGGAGCAACGTCGATTTGCTGCGCAGTCTGCGGTACCGTGACCGCGGTGCCTGCCCCCGAGCAGAAATCT
AGCTGCAATGTTCACGAAAATAAAGAGAGATTAAAGGGGAATACAAATGGCTTCAGGGCTCCGCAACGGTGCGCGCGTCG
CGTTGATGGTGCCTGCACTCAGGTCGCTCGAGAAGTACACACTGAAGTTGCTCTGGTCATATTTACATTGTTGTGTGTAA
CTCTTCCTGGTTTGCTTTTCAGTCTAGGATAGAGATTTACATGTCAAAGAGTCAGTGCACTTTTGAAAGTGTAATGCGAT
GCAAGTAAAAACAGTTTTGGACAAGATCGAAAGGATCCATGTCATTTGCTGTCAGAATAGTAATGTTTGTTACTTAATGA
GGTTTGTTACAAACCTTAATTACAGGAATAGCATTGTAGTAGTTCTTAACTTTTTACACTCCTATTTGTAGATGTACAAT
TATCAGATGGACTATTTTATACACTACTTTCTCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51194.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis