Browse Element(s) Details


Os.8135.1.S1_at

Description gb:AK105684.1
DB_XREF= gi:32990893
TID=Os.8135.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-201-B08, full insert sequence.
FL= gb:AK105684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2893011/11Protein kinase domain containing protein, expressed
LOC_Os09g062101/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28900OsAffx.16463.1.S1_at11/117+16940491..16945138pentatricopeptide, putative, expressed
LOC_Os07g28910Os.51194.1.A1_x_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910Os.18659.1.S1_s_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.12663.1.S1_at7/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.11133.1.S1_at1/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28920Os.53096.1.S1_at11/117+16953997..16958742expressed protein
LOC_Os07g28930Os.8135.1.S1_at11/117+16965239..16968267Protein kinase domain containing protein, expressed
LOC_Os07g28930OsAffx.28653.1.S1_x_at9/117+16965239..16968267Protein kinase domain containing protein, expressed
LOC_Os07g28940Os.38150.1.A1_s_at9/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed
LOC_Os07g28940Os.11809.1.S1_at6/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed
LOC_Os07g28960OsAffx.16464.1.S1_at11/117+16987773..16988418hypothetical protein
LOC_Os07g28970Os.24942.4.A1_x_at6/117+16993244..16993959hypothetical protein
LOC_Os07g28970Os.24942.4.A1_at4/117+16993244..16993959hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8135.1.S1_at--601--7311Chr07:16967940..16967964 (25 bp)
GTGCTGATCCAGTTACCTATTTTGA
LOC_Os07g28930
Os.8135.1.S1_at--170--3451Chr07:16967949..16967973 (25 bp)
CAGTTACCTATTTTGATCGGCTTGG
LOC_Os07g28930
Os.8135.1.S1_at--1153--7511Chr07:16967989..16968013 (25 bp)
GTGGAGAGGCATATTCAATTTCATT
LOC_Os07g28930
Os.8135.1.S1_at--250--6532Chr09:2902327..2902372 (24 bp)
GATTTGTGTCATTGATTTGATTGCT
LOC_Os09g06210
Os.8135.1.S1_at--292--9811Chr07:16968048..16968072 (25 bp)
TAACTACCCTTTGTGATGGAGCCAA
LOC_Os07g28930
Os.8135.1.S1_at--483--7391Chr07:16968060..16968084 (25 bp)
GTGATGGAGCCAATCTTCAAGATTT
LOC_Os07g28930
Os.8135.1.S1_at--660--4351Chr07:16968103..16968127 (25 bp)
CCAGCTGATGCTTTTTACATATCTT
LOC_Os07g28930
Os.8135.1.S1_at--58--451Chr07:16968123..16968147 (25 bp)
ATCTTATATGTTCCTGCTAACTGTA
LOC_Os07g28930
Os.8135.1.S1_at--746--2411Chr07:16968148..16968172 (25 bp)
AAAAAGTTTTGTATTTGCACACAGA
LOC_Os07g28930
Os.8135.1.S1_at--147--10751Chr07:16968162..16968186 (25 bp)
TTGCACACAGAATACACATGGAGGT
LOC_Os07g28930
Os.8135.1.S1_at--88--191Chr07:16968198..16968222 (25 bp)
ATTTACCTTTGTTAATGTTCACAGA
LOC_Os07g28930
Target Sequence 
GTGCTGATCCAGTTACCTATTTTGATCGGCTTGGNATCTGTTTTCTTTTTGTGGAGAGGCATATTCAATTTCATTAGATT
TGTGTCATTGATTTGATTGCTGANGGTTAATAACTACCCTTTGTGATGGAGCCAATCTTCAAGATTTGAGGATTTGGCAA
AAGCNCCAGCTGATGCTTTTTACATATCTTATATGTTCCTGCTAACTGTAAAAAAGTTTTGTATTTGCACACAGAATACA
CATGGAGGTACATATTTCTTATTTACCTTTGTTAATGTTCACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis