Browse Element(s) Details


OsAffx.16464.1.S1_at

Description tigr:9635.m02817
TID=OsAffx.16464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2896011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28930Os.8135.1.S1_at11/117+16965239..16968267Protein kinase domain containing protein, expressed
LOC_Os07g28930OsAffx.28653.1.S1_x_at9/117+16965239..16968267Protein kinase domain containing protein, expressed
LOC_Os07g28940Os.38150.1.A1_s_at9/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed
LOC_Os07g28940Os.11809.1.S1_at6/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed
LOC_Os07g28960OsAffx.16464.1.S1_at11/117+16987773..16988418hypothetical protein
LOC_Os07g28970Os.24942.4.A1_x_at6/117+16993244..16993959hypothetical protein
LOC_Os07g28970Os.24942.4.A1_at4/117+16993244..16993959hypothetical protein
LOC_Os07g28980OsAffx.31069.5.S1_at2/117+17000046..17005184hypothetical protein
LOC_Os07g28980OsAffx.31069.5.S1_x_at1/117+17000046..17005184hypothetical protein
LOC_Os07g28990OsAffx.16466.1.S1_at11/117+17008084..17008572expressed protein
LOC_Os07g29000Os.26886.1.S1_x_at8/117+17009733..17012624transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29000Os.26886.3.S1_x_at6/117+17009733..17012624transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29000OsAffx.16244.1.S1_x_at1/117+17009733..17012624transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16464.1.S1_at--722--2451Chr07:16988354..16988378 (25 bp)
AACAAAGGAGCTGGCTTGAGCCCAA
LOC_Os07g28960
OsAffx.16464.1.S1_at--503--10751Chr07:16988339..16988363 (25 bp)
TTGAGCCCAAGGTCAACGATCACGA
LOC_Os07g28960
OsAffx.16464.1.S1_at--898--9771Chr07:16988004..16988320 (25 bp)
TAAGGGCGACAAGGCACAACTCCGG
LOC_Os07g28960
OsAffx.16464.1.S1_at--538--5611Chr07:16987997..16988017 (21 bp)
GACAAGGCACAACTCCGGTTACGGT
LOC_Os07g28960
OsAffx.16464.1.S1_at--1013--10451Chr07:16987979..16988003 (25 bp)
TTACGGTCTGGCTTAACTCCCGCTA
LOC_Os07g28960
OsAffx.16464.1.S1_at--249--8251Chr07:16987950..16987974 (25 bp)
GGCACAGGCACTTGCTATCAAAGGC
LOC_Os07g28960
OsAffx.16464.1.S1_at--76--8251Chr07:16987944..16987968 (25 bp)
GGCACTTGCTATCAAAGGCGAGCTA
LOC_Os07g28960
OsAffx.16464.1.S1_at--966--10711Chr07:16987909..16987933 (25 bp)
TTGCTGTCAAGCCTTTTGCCCGAGA
LOC_Os07g28960
OsAffx.16464.1.S1_at--368--3671Chr07:16987897..16987921 (25 bp)
CTTTTGCCCGAGAGGTTGAGATACT
LOC_Os07g28960
OsAffx.16464.1.S1_at--748--3231Chr07:16987863..16987887 (25 bp)
CAAGCCGGCCGAGGGATTCAAAGTT
LOC_Os07g28960
OsAffx.16464.1.S1_at--1076--811Chr07:16987838..16987862 (25 bp)
ATGGTCGAAAGAGTTGCCAGAGAGC
LOC_Os07g28960
Target Sequence 
AACAAAGGAGCTGGCTTGAGCCCAAGGTCAACGATCACGACAAGGAAAAGGAGCTGAATAAGGGCGACAAGGCACAACTC
CGGTTACGGTCTGGCTTAACTCCCGCTACACAGGCACAGGCACTTGCTATCAAAGGCGAGCTAGGTTGGGGTCTTGCTGT
CAAGCCTTTTGCCCGAGAGGTTGAGATACTGAAGATGGCCAAGCCGGCCGAGGGATTCAAAGTTATGGTCGAAAGAGTTG
CCAGAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis