Browse Element(s) Details


Os.11809.1.S1_at

Description gb:AK066964.1
DB_XREF= gi:32976982
TID=Os.11809.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20815 myosin heavy chain-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092J24, full insert sequence.
FL= gb:AK066964.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g289406/11Golgi-localized GRIP domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28910Os.51194.1.A1_x_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910Os.18659.1.S1_s_at11/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.12663.1.S1_at7/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28910OsAffx.11133.1.S1_at1/117+16948397..16953113LSD1 zinc finger family protein, expressed
LOC_Os07g28920Os.53096.1.S1_at11/117+16953997..16958742expressed protein
LOC_Os07g28930Os.8135.1.S1_at11/117+16965239..16968267Protein kinase domain containing protein, expressed
LOC_Os07g28930OsAffx.28653.1.S1_x_at9/117+16965239..16968267Protein kinase domain containing protein, expressed
LOC_Os07g28940Os.38150.1.A1_s_at9/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed
LOC_Os07g28940Os.11809.1.S1_at6/117+16970287..16983278Golgi-localized GRIP domain-containing protein, putative, expressed
LOC_Os07g28960OsAffx.16464.1.S1_at11/117+16987773..16988418hypothetical protein
LOC_Os07g28970Os.24942.4.A1_x_at6/117+16993244..16993959hypothetical protein
LOC_Os07g28970Os.24942.4.A1_at4/117+16993244..16993959hypothetical protein
LOC_Os07g28980OsAffx.31069.5.S1_at2/117+17000046..17005184hypothetical protein
LOC_Os07g28980OsAffx.31069.5.S1_x_at1/117+17000046..17005184hypothetical protein
LOC_Os07g28990OsAffx.16466.1.S1_at11/117+17008084..17008572expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11809.1.S1_at--271--1731Chr07:16982868..16982892 (25 bp)
ACCAGACGGTGGATCCACGCCAAAT
LOC_Os07g28940
Os.11809.1.S1_at--989--3351Chr07:16982883..16982907 (25 bp)
CACGCCAAATTCATTCTTCTCAAGA
LOC_Os07g28940
Os.11809.1.S1_at--651--1631Chr07:16982987..16983011 (25 bp)
AGCGGTTTTTCTGGCCATAGATGAT
LOC_Os07g28940
Os.11809.1.S1_at--192--5591Chr07:16983187..16983211 (25 bp)
GAAATGCGCCAATTTTGCCTTCAAG
LOC_Os07g28940
Os.11809.1.S1_at--1006--9151Chr07:16983191..16983215 (25 bp)
TGCGCCAATTTTGCCTTCAAGGATG
LOC_Os07g28940
Os.11809.1.S1_at--617--7311Chr07:16983224..16983248 (25 bp)
GTGCTTACAGGTGGTCAGCGTTAAT
LOC_Os07g28940
Os.11809.1.S1_at--594--4731Chr07:16983276..16983300 (25 bp)
GCTGATTAGCACCATATTTTAAGCG
NONE
Os.11809.1.S1_at--964--1611Chr07:16983297..16983321 (25 bp)
AGCGTGTCAGCTTCTATGATTAATT
NONE
Os.11809.1.S1_at--385--4911Chr07:16983306..16983330 (25 bp)
GCTTCTATGATTAATTTCCCTTCTG
NONE
Os.11809.1.S1_at--33--191Chr07:16983319..16983343 (25 bp)
ATTTCCCTTCTGTGTTAAGAGTGCA
NONE
Os.11809.1.S1_at--950--2391Chr07:16983346..16983370 (25 bp)
AAACTATCTGATTGGCAGCCGAAGT
NONE
Target Sequence 
ACCAGACGGTGGATCCACGCCAAATTCATTCTTCTCAAGATTCACATTCTAGCAGAGGTACATAGATTTGACATTCTAGC
TGGGGGTAGCCGGAGAGGATGCTGTTTGCACGAAATCCCAGCGGTTTTTCTGGCCATAGATGATTCTATTTGTTTATTAT
TTCTAGGTCGCCACTTCCTCTCGTCACATTTTGTAAAACTAGTGTATATAAAATTATGAACATTATAAGCAATTTTATGC
CTAAAGTGGAAGGGATAATGAAATAGTGGGATCGGCAGAAATATGTTATGTATTTGCAACACTTNNNNCAAAGGNAAATG
AAATGCGCCAATTTTGCCTTCAAGGATGTTAATTTTGTGCTTACAGGTGGTCAGCGTTAATTTTGATGTGTGTGCAGTGT
GCTTNCCCTGCTGATTAGCACCATATTTTAAGCGTGTCAGCTTCTATGATTAATTTCCCTTCTGTGTTAAGAGTGCAATA
AACTATCTGATTGGCAGCCGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis