Browse Element(s) Details


Os.24942.4.A1_x_at

Description gb:NM_194587.1
DB_XREF= gi:37530533
TID=Os.24942.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.24942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1096D03.32 (B1096D03.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1014H12.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0245011/11hypothetical protein
LOC_Os05g222807/11hypothetical protein
LOC_Os03g047007/11hypothetical protein
LOC_Os09g063806/11hypothetical protein
LOC_Os07g289706/11hypothetical protein
LOC_Os01g284606/11hypothetical protein
LOC_Os09g195206/11hypothetical protein
LOC_Os03g339705/11hypothetical protein
LOC_Os01g621405/11hypothetical protein
LOC_Os08g111004/11hypothetical protein
LOC_Os03g490903/11hypothetical protein
LOC_Os04g074601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02390Os.46268.1.S1_at11/1110+853638..855101NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02400NANA10+857827..858489transposon protein, putative, unclassified
LOC_Os10g02410OsAffx.18088.1.S1_at11/1110+864509..864727hypothetical protein
LOC_Os10g02420NANA10+868476..871310retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g02430OsAffx.20387.1.S1_x_at1/1110+871563..874153transposon protein, putative, unclassified
LOC_Os10g02440Os.25754.2.S1_x_at3/1110+875109..876592hypothetical protein
LOC_Os10g02440Os.53479.1.S1_x_at1/1110+875109..876592hypothetical protein
LOC_Os10g02450Os.24942.4.A1_at11/1110+879913..880314hypothetical protein
LOC_Os10g02450Os.24942.4.A1_x_at11/1110+879913..880314hypothetical protein
LOC_Os10g02470OsAffx.30243.1.S1_at10/1110+888495..891169aldo/keto reductase, putative
LOC_Os10g02480Os.55053.1.S1_at11/1110+895717..901058NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02480Os.3985.1.S1_at10/1110+895717..901058NADH-dependent oxidoreductase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24942.4.A1_x_at--549--5551Chr10:880257..880281 (25 bp)
GAAAGCTCATGTGTGCATGGAAATC
LOC_Os10g02450
Os.24942.4.A1_x_at--629--40313Chr09:3001456..3001486 (25 bp)
CGATTCCGAACGATGCATGCATGTG
LOC_Os09g06380
Os.24942.4.A1_x_at--446--6515Chr12:15375082..15375106 (25 bp)
ATGCATGTGGTCTTCTAGCCTTCAG
NONE
Os.24942.4.A1_x_at--717--9979Chr12:15375097..15375121 (25 bp)
TAGCCTTCAGGATGCTCACCGTGGG
NONE
Os.24942.4.A1_x_at--807--9671Chr10:880187..880211 (25 bp)
TCACCGTGGGTCGAGCTAGGGTTTT
LOC_Os10g02450
Os.24942.4.A1_x_at--696--7211Chr10:880178..880202 (25 bp)
GTCGAGCTAGGGTTTTCGAGGTCTT
LOC_Os10g02450
Os.24942.4.A1_x_at--402--37925Chr09:3001555..3001579 (25 bp)
CTCCTCCTCGGGTGAACGACGACGG
LOC_Os09g06380
Os.24942.4.A1_x_at--999--61936Chr12:15375283..15375306 (24 bp)
GAGGAATCGAACAATGGCTCACCGA
NONE
Os.24942.4.A1_x_at--215--29729Chr10:4771873..4771897 (25 bp)
AATGGCTCACCGAGGCAGCGGTAAT
NONE
Os.24942.4.A1_x_at--189--1297Chr09:3001715..3001739 (25 bp)
AGATCGGCGCCGGTGAAGAAAAGAT
LOC_Os09g06380
Os.24942.4.A1_x_at--910--7754Chr05:12535257..12535281 (25 bp)
GGTGAAGAAAAGATGCGTTCTCCGA
LOC_Os05g22280
Target Sequence 
GAAAGCTCATGTGTGCATGGAAATCGATTCCGAACGATGCATGCATGTGGTCTTCTAGCCTTCAGGATGCTCACCGTGGG
TCGAGCTAGGGTTTTCGAGGTCTTGGCGGCAGCGGTGACTTGTGGAACGGCTCGGCGACGGTGCTCCTCCTCGGGTGAAC
GACGACGGCTCGAACGGGACGATGAGCTGCTACAAGCAAGCATGCACGAGGTTTGTGAGGTCAAGGAGATGGTGTATGCG
CGAGGAATCGAACAATGGCTCACCGAGGCAGCGGTAATCGACGATGACGGCGGAGGCGATTCTAGATCGGCGCCGGTGAA
GAAAAGATGCGTTCTCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24942.4.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis