Browse Element(s) Details


OsAffx.30243.1.S1_at

Description tigr:9638.m00151
TID=OsAffx.30243.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0247010/11aldo/keto reductase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02410OsAffx.18088.1.S1_at11/1110+864509..864727hypothetical protein
LOC_Os10g02420NANA10+868476..871310retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g02430OsAffx.20387.1.S1_x_at1/1110+871563..874153transposon protein, putative, unclassified
LOC_Os10g02440Os.25754.2.S1_x_at3/1110+875109..876592hypothetical protein
LOC_Os10g02440Os.53479.1.S1_x_at1/1110+875109..876592hypothetical protein
LOC_Os10g02450Os.24942.4.A1_at11/1110+879913..880314hypothetical protein
LOC_Os10g02450Os.24942.4.A1_x_at11/1110+879913..880314hypothetical protein
LOC_Os10g02470OsAffx.30243.1.S1_at10/1110+888495..891169aldo/keto reductase, putative
LOC_Os10g02480Os.55053.1.S1_at11/1110+895717..901058NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02480Os.3985.1.S1_at10/1110+895717..901058NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02490Os.46569.1.S1_at11/1110+908055..910612NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02500OsAffx.30244.1.S1_x_at11/1110+910835..914167Serine/threonine-protein kinase BRI1-like 2 precursor, putative
LOC_Os10g02500OsAffx.30244.1.S1_at11/1110+910835..914167Serine/threonine-protein kinase BRI1-like 2 precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30243.1.S1_at--984--451NONE
ATCTCAGGCGAAGCGAACGGTTACA
NONE
OsAffx.30243.1.S1_at--318--1031Chr10:889950..889974 (25 bp)
AGGTGCATCCTTATTGCCGGCAAAA
LOC_Os10g02470
OsAffx.30243.1.S1_at--953--931Chr10:890002..890026 (25 bp)
AGGAATCCAAATGTGCGCCTACTCT
LOC_Os10g02470
OsAffx.30243.1.S1_at--318--4171Chr10:890017..890041 (25 bp)
CGCCTACTCTCCATTAGGTGCAAAT
LOC_Os10g02470
OsAffx.30243.1.S1_at--148--2311Chr10:890038..890062 (25 bp)
AAATGGCACTTCATGGTGTAGCAAT
LOC_Os10g02470
OsAffx.30243.1.S1_at--1075--6951Chr10:890055..890079 (25 bp)
GTAGCAATGTCATGGACTGCCCACT
LOC_Os10g02470
OsAffx.30243.1.S1_at--152--5731Chr10:890069..890093 (25 bp)
GACTGCCCACTTAAACAGATTGCTT
LOC_Os10g02470
OsAffx.30243.1.S1_at--407--6611Chr10:890568..890592 (25 bp)
GATTGGGAGCTCACTGATGTTGACC
LOC_Os10g02470
OsAffx.30243.1.S1_at--208--6291Chr10:890583..890607 (25 bp)
GATGTTGACCACCACAAGATAAGCA
LOC_Os10g02470
OsAffx.30243.1.S1_at--1062--6451Chr10:890600..890624 (25 bp)
GATAAGCACCCTCCCGGAGTCAAGG
LOC_Os10g02470
OsAffx.30243.1.S1_at--502--6531Chr10:890634..890658 (25 bp)
GATTTTTTCGTCCATGAATCCGGAG
LOC_Os10g02470
Target Sequence 
ATCTCAGGCGAAGCGAACGGTTACAGGTTGAGGTGCATCCTTATTGCCGGCAAAATAAGTTGAGGGAGTTCTGCAAAGGG
AAAGGAATCCAAATGTGCGCCTACTCTCCATTAGGTGCAAATGGCACTTCATGGTGTAGCAATGTCATGGACTGCCCACT
TAAACAGATTGCTTTAGAAAGGGGCAAAACAGTTGCCCAGGTATGCCTAAGATGGGTGTATGAGTGTATGAGCAAGNNNN
NNNNNNANAGGAGGTTGCGAGAGAATCTAGGTATCTTTGATTGGGAGCTCACTGATGTTGACCACCACAAGATAAGCACC
CTCCCGGAGTCAAGGGGATGCCTTGATTTTTTCGTCCATGAATCCGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis