Browse Element(s) Details


OsAffx.30244.1.S1_x_at

Description tigr:9638.m00154
TID=OsAffx.30244.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0250011/11Serine/threonine-protein kinase BRI1-like 2 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02470OsAffx.30243.1.S1_at10/1110+888495..891169aldo/keto reductase, putative
LOC_Os10g02480Os.55053.1.S1_at11/1110+895717..901058NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02480Os.3985.1.S1_at10/1110+895717..901058NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02490Os.46569.1.S1_at11/1110+908055..910612NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02500OsAffx.30244.1.S1_x_at11/1110+910835..914167Serine/threonine-protein kinase BRI1-like 2 precursor, putative
LOC_Os10g02500OsAffx.30244.1.S1_at11/1110+910835..914167Serine/threonine-protein kinase BRI1-like 2 precursor, putative
LOC_Os10g02509Os.20496.2.S1_a_at11/1110+923231..925262GAGA binding protein-like family protein, expressed
LOC_Os10g02509Os.23269.1.S1_s_at11/1110+923231..925262GAGA binding protein-like family protein, expressed
LOC_Os10g02509Os.23269.1.S1_x_at2/1110+923231..925262GAGA binding protein-like family protein, expressed
LOC_Os10g02520Os.14919.1.S1_at1/1110+931739..935463transposon protein, putative, Mutator sub-class
LOC_Os10g02520Os.56216.1.S1_at1/1110+931739..935463transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0010234biological_processtapetal cell fate specification
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30244.1.S1_x_at--917--3551Chr10:911394..911418 (25 bp)
CATCACCGGCGATGTCGTGGGAGCA
LOC_Os10g02500
OsAffx.30244.1.S1_x_at--692--8691Chr10:911334..911358 (25 bp)
TGTGCTTCCTCCACTACAACTGCAT
LOC_Os10g02500
OsAffx.30244.1.S1_x_at--236--8531Chr10:911205..911229 (25 bp)
TGGACACGCACCTGAGCGTCAGCAC
LOC_Os10g02500
OsAffx.30244.1.S1_x_at--301--1871Chr10:911160..911184 (25 bp)
ACGTGCCGCCGGAGTACTACCAGAG
LOC_Os10g02500
OsAffx.30244.1.S1_x_at--727--9891Chr10:911146..911170 (25 bp)
TACTACCAGAGCTTCCGGTGCACGG
LOC_Os10g02500
OsAffx.30244.1.S1_x_at--608--4351Chr10:911141..911165 (25 bp)
CCAGAGCTTCCGGTGCACGGTGAAG
LOC_Os10g02500
OsAffx.30244.1.S1_x_at--334--1971Chr10:911037..911061 (25 bp)
ACACCAACCTCGTGGGCTGGGTCAA
LOC_Os10g02500
OsAffx.30244.1.S1_x_at--777--1851Chr10:910941..910965 (25 bp)
ACGAGATGGCCAGGTTCATGGACAT
LOC_Os10g02500
OsAffx.30244.1.S1_x_at--923--1111Chr10:910908..910932 (25 bp)
AGTGCGTCGACGACTTCCCCTCAAA
LOC_Os10g02500
OsAffx.30244.1.S1_x_at--1061--2351Chr10:910886..910910 (25 bp)
AAAGCGCCCAAACATGCTGCAGGTG
LOC_Os10g02500
OsAffx.30244.1.S1_x_at--683--2391Chr10:910877..910901 (25 bp)
AAACATGCTGCAGGTGGTCGCCATG
LOC_Os10g02500
Target Sequence 
CATCACCGGCGATGTCGTGGGAGCAGCGGAAGAAGGTGGCGCGCGGCGCGGCGAGGGGCCTGTGCTTCCTCCACTACAAC
TGCATCCCCCACATCATCCACCGCGACATGAAGTCCAGCAACGTGCTCCTCGACGGCGACATGGAGGCGCGCGTCGCCGA
CTTCGGCATGGCCCGCCTCATCAGCGCGCTGGACACGCACCTGAGCGTCAGCACGCTCGCCGGGACGCCGGGCTACGTGC
CGCCGGAGTACTACCAGAGCTTCCGGTGCACGGTGAAGGGGGACGTCTACTCCTTCGGCGTCGTCCTCCTCGAGCTGCTC
ACCGGCCGCCGCCCCACCGACAAGGACGACTTCGGGGACACCAACCTCGTGGGCTGGGTCAAGATGAAGGTCGGGGACGG
CGCCGGGAAGGAGGTGCTCGACCCGGAGCTCGTCGTCGAGGGCGCCGACGCCGACGAGATGGCCAGGTTCATGGACATGG
CGCTGCAGTGCGTCGACGACTTCCCCTCAAAGCGCCCAAACATGCTGCAGGTGGTCGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30244.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis