Browse Element(s) Details


Os.46569.1.S1_at

Description gb:AK063329.1
DB_XREF= gi:32973347
TID=Os.46569.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.46569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative NADPH-dependent oxidoreductase (OSJNBa0092N12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H10, full insert sequence.
FL= gb:AK063329.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0249011/11NADH-dependent oxidoreductase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02470OsAffx.30243.1.S1_at10/1110+888495..891169aldo/keto reductase, putative
LOC_Os10g02480Os.55053.1.S1_at11/1110+895717..901058NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02480Os.3985.1.S1_at10/1110+895717..901058NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02490Os.46569.1.S1_at11/1110+908055..910612NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02500OsAffx.30244.1.S1_x_at11/1110+910835..914167Serine/threonine-protein kinase BRI1-like 2 precursor, putative
LOC_Os10g02500OsAffx.30244.1.S1_at11/1110+910835..914167Serine/threonine-protein kinase BRI1-like 2 precursor, putative
LOC_Os10g02509Os.20496.2.S1_a_at11/1110+923231..925262GAGA binding protein-like family protein, expressed
LOC_Os10g02509Os.23269.1.S1_s_at11/1110+923231..925262GAGA binding protein-like family protein, expressed
LOC_Os10g02509Os.23269.1.S1_x_at2/1110+923231..925262GAGA binding protein-like family protein, expressed
LOC_Os10g02520Os.14919.1.S1_at1/1110+931739..935463transposon protein, putative, Mutator sub-class
LOC_Os10g02520Os.56216.1.S1_at1/1110+931739..935463transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46569.1.S1_at--876--7871Chr10:909856..909880 (25 bp)
GGTTGAGATAAACCCCTATTGCCGG
LOC_Os10g02490
Os.46569.1.S1_at--557--9491Chr10:909935..909959 (25 bp)
TCTCCTTTAGGAGCAAGTGGCACTA
LOC_Os10g02490
Os.46569.1.S1_at--580--8531Chr10:909981..910005 (25 bp)
TGGACTGCCCTGTTCTCAAACATAT
LOC_Os10g02490
Os.46569.1.S1_at--308--4351Chr10:910223..910246 (24 bp)
CCAGGTATGCCTGAGGTGGCTGCAT
LOC_Os10g02490
Os.46569.1.S1_at--1066--9671Chr10:910326..910350 (25 bp)
TCACCGATGCTGATCGCCAGGAGAT
LOC_Os10g02490
Os.46569.1.S1_at--856--1251Chr10:910347..910371 (25 bp)
AGATAAGCGCCCTCCCGGAATTCAG
LOC_Os10g02490
Os.46569.1.S1_at--359--7611Chr10:910372..910396 (25 bp)
GGGAAACCGTGATTTCTATGTCCAC
LOC_Os10g02490
Os.46569.1.S1_at--1116--5211Chr10:910397..910421 (25 bp)
GAATCTGGCCCATACAAAACCACTG
LOC_Os10g02490
Os.46569.1.S1_at--603--7951Chr10:910443..910467 (25 bp)
TTACTGGGCCACAACTAAAAACCTG
LOC_Os10g02490
Os.46569.1.S1_at--1094--2411Chr10:910460..910484 (25 bp)
AAAACCTGTTAATGGGCTGCTCAAG
LOC_Os10g02490
Os.46569.1.S1_at--512--311Chr10:910512..910536 (25 bp)
ATACCACTGAGTTGTCTTGCTTATA
LOC_Os10g02490
Target Sequence 
GGTTGAGATAAACCCCTATTGCCGGCAGAACAAACTAAGGGAGTTTTGTAAGGAGAAAGAAATCCAGCTCTGTGCCTACT
CTCCTTTAGGAGCAAGTGGCACTATATGGGGCAGCAATGCCGTCTTGGACTGCCCTGTTCTCAAACATATCGCCGTACAG
AAGGGCAAAACGGTTGCCCAGGTATGCCTGAGGTGGCTGCATGAGCAAGGCGATTGCATAATCGTCAAGAGCTTCAATGA
GAGAAGAATGAGAGAGAACCTCGAAATTTTTGATTGGGAGCTCACCGATGCTGATCGCCAGGAGATAAGCGCCCTCCCGG
AATTCAGGGGAAACCGTGATTTCTATGTCCACGAATCTGGCCCATACAAAACCACTGATGAGTTTTGGGATGGCGAGATT
ACTGGGCCACAACTAAAAACCTGTTAATGGGCTGCTCAAGAGCAATGAATTGTGTTATTGGTCCAATATACCACTGAGTT
GTCTTGCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis