Browse Element(s) Details


Os.23269.1.S1_s_at

Description gb:AY570521.1
DB_XREF= gi:45758904
TID=Os.23269.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23269 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) barley B recombinant like protein C mRNA, complete cds.
PROD=barley B recombinant like protein C
FL= gb:AY570521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0262011/11GAGA binding protein-like family protein, expressed
LOC_Os10g0250911/11GAGA binding protein-like family protein, expressed
LOC_Os10g025842/11GAGA binding protein-like family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02584Os.20496.2.S1_a_at8/1110+960885..961971GAGA binding protein-like family protein
LOC_Os10g02584Os.23269.1.S1_s_at2/1110+960885..961971GAGA binding protein-like family protein
LOC_Os10g02600Os.51841.1.S1_x_at1/1110+976794..979110Zinc knuckle family protein
LOC_Os10g02610NANA10+982312..983598hypothetical protein
LOC_Os10g02620Os.23269.1.S1_s_at11/1110+984233..987054GAGA binding protein-like family protein, expressed
LOC_Os10g02620Os.23269.1.S1_x_at11/1110+984233..987054GAGA binding protein-like family protein, expressed
LOC_Os10g02620Os.20496.2.S1_a_at1/1110+984233..987054GAGA binding protein-like family protein, expressed
LOC_Os10g02630Os.4669.3.S1_x_at11/1110+991798..997065transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g02630Os.4669.1.S1_a_at11/1110+991798..997065transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g02640OsAffx.18924.1.S1_at11/1110+1003645..1006125hypothetical protein
LOC_Os10g02640OsAffx.18924.2.S1_x_at3/1110+1003645..1006125hypothetical protein
LOC_Os10g02644NANA10+1007594..1007803hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23269.1.S1_s_at--434--3613Chr10:984495..984519 (25 bp)
CTTCTGGGCGAAGCATGGAACAAAC
LOC_Os10g02620
Os.23269.1.S1_s_at--225--3893Chr10:984492..984516 (25 bp)
CTGGGCGAAGCATGGAACAAACAAG
LOC_Os10g02620
Os.23269.1.S1_s_at--955--7073Chr10:984382..984406 (25 bp)
GTAATTGTCTGTATGTACTCTAGAT
LOC_Os10g02620
Os.23269.1.S1_s_at--788--10273Chr10:984306..984330 (25 bp)
TTTGCAGTAGTTTACATGCCTCATC
LOC_Os10g02620
Os.23269.1.S1_s_at--490--5033Chr10:984303..984327 (25 bp)
GCAGTAGTTTACATGCCTCATCTGT
LOC_Os10g02620
Os.23269.1.S1_s_at--172--1193Chr10:984301..984325 (25 bp)
AGTAGTTTACATGCCTCATCTGTGA
LOC_Os10g02620
Os.23269.1.S1_s_at--444--10053Chr10:984299..984323 (25 bp)
TAGTTTACATGCCTCATCTGTGACC
LOC_Os10g02620
Os.23269.1.S1_s_at--839--4273Chr10:984264..984288 (25 bp)
CCTGTATGGTGGCTATCTGCATGTA
LOC_Os10g02620
Os.23269.1.S1_s_at--1159--3873Chr10:984263..984287 (25 bp)
CTGTATGGTGGCTATCTGCATGTAT
LOC_Os10g02620
Os.23269.1.S1_s_at--89--6933Chr10:984261..984285 (25 bp)
GTATGGTGGCTATCTGCATGTATCT
LOC_Os10g02620
Os.23269.1.S1_s_at--623--813Chr10:984259..984283 (25 bp)
ATGGTGGCTATCTGCATGTATCTTT
LOC_Os10g02620
Target Sequence 
CTTCTGGGCGAAGCATGGAACAAACAAGTTTGTTACCATAANATAAGGTAAGAGACTAAAANAAATTCTAAATTTGTTGG
CTTTGTAGGTTCCTCTGCTGCTGTTTGGTCTNAGTAATTGTCTGTATGTACTCTAGATGACAAACTGCAGAATCNTTTTA
GGTGTAGGTTTTANCCATGTCCTGTCCCTTTTGCAGTAGTTTACATGCCTCATCTGTGACCTNGGNNCTNACCTGTATGG
TGGCTATCTGCATGTATCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23269.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis