Browse Element(s) Details


Os.4669.3.S1_x_at

Description gb:NM_194601.1
DB_XREF= gi:37530561
TID=Os.4669.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4669 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative U1 small nuclear ribonucleoprotein (OSJNBa0092N12.2), mRNA.
PROD=putative U1 small nuclear ribonucleoprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0263011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02600Os.51841.1.S1_x_at1/1110+976794..979110Zinc knuckle family protein
LOC_Os10g02610NANA10+982312..983598hypothetical protein
LOC_Os10g02620Os.23269.1.S1_s_at11/1110+984233..987054GAGA binding protein-like family protein, expressed
LOC_Os10g02620Os.23269.1.S1_x_at11/1110+984233..987054GAGA binding protein-like family protein, expressed
LOC_Os10g02620Os.20496.2.S1_a_at1/1110+984233..987054GAGA binding protein-like family protein, expressed
LOC_Os10g02630Os.4669.3.S1_x_at11/1110+991798..997065transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g02630Os.4669.1.S1_a_at11/1110+991798..997065transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g02640OsAffx.18924.1.S1_at11/1110+1003645..1006125hypothetical protein
LOC_Os10g02640OsAffx.18924.2.S1_x_at3/1110+1003645..1006125hypothetical protein
LOC_Os10g02644NANA10+1007594..1007803hypothetical protein
LOC_Os10g02650OsAffx.20792.1.S1_at11/1110+1018079..1021742hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4669.3.S1_x_at--595--2511Chr10:992735..992759 (25 bp)
AACTCGTGAACGATCCCATGACCGT
LOC_Os10g02630
Os.4669.3.S1_x_at--1021--1771Chr10:992715..992739 (25 bp)
ACCGTACTCGCGAGCGTGATTCAAA
LOC_Os10g02630
Os.4669.3.S1_x_at--634--10011Chr10:992684..992708 (25 bp)
TAGACACCACCATAGGGATCGGGAC
LOC_Os10g02630
Os.4669.3.S1_x_at--493--1271Chr10:992621..992645 (25 bp)
AGATCATGGTCGTGACCGTGACCGT
LOC_Os10g02630
Os.4669.3.S1_x_at--486--5831Chr10:992602..992626 (25 bp)
GACCGTGAGCGTGATCGTCGTGATA
LOC_Os10g02630
Os.4669.3.S1_x_at--603--6551Chr10:992551..992575 (25 bp)
GATTATGAGAGAGACCGTGACCGTG
LOC_Os10g02630
Os.4669.3.S1_x_at--756--3991Chr10:992530..992554 (25 bp)
CGTGGTCATGATCGCCATCGTGAGA
LOC_Os10g02630
Os.4669.3.S1_x_at--180--6551Chr10:992485..992509 (25 bp)
GATTACGAGCGTGCAAGTCATGAAC
LOC_Os10g02630
Os.4669.3.S1_x_at--46--2591Chr10:992463..992487 (25 bp)
AACGGGACCGTGGTCACATGCATGA
LOC_Os10g02630
Os.4669.3.S1_x_at--136--4751Chr10:992431..992455 (25 bp)
GCTGAATTTGCCAACGGTGAGCCAA
LOC_Os10g02630
Os.4669.3.S1_x_at--1041--6331Chr10:992359..992383 (25 bp)
GATGCTTATGAGACGGAGCGCTCAA
LOC_Os10g02630
Target Sequence 
AACTCGTGAACGATCCCATGACCGTACTCGCGAGCGTGATTCAAAAGAAGATAGACACCACCATAGGGATCGGGACAGGA
CTCGGGACAGGGAACGAGGAAGGGACCGGGAGAGAGATCATGGTCGTGACCGTGACCGTGAGCGTGATCGTCGTGATAGA
GATAGGGACAGGGATCGTGGTCGGGATTATGAGAGAGACCGTGACCGTGGTCATGATCGCCATCGTGAGAGAGGCAGGGA
CCGTGAGAGAGATTACGAGCGTGCAAGTCATGAACGGGACCGTGGTCACATGCATGAGAGAGATGCTGAATTTGCCAACG
GTGAGCCAAAACATGATCAGGAATATGGCTATAACTATGAGCAACACAAAAGCCATGATGCTTATGAGACGGAGCGCTCA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4669.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis