Browse Element(s) Details


Os.4669.1.S1_a_at

Description gb:AK100686.1
DB_XREF= gi:32985895
TID=Os.4669.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4669 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative U1 small nuclear ribonucleoprotein (OSJNBa0092N12.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023113P16, full insert sequence.
FL= gb:AK100686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0263011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02600Os.51841.1.S1_x_at1/1110+976794..979110Zinc knuckle family protein
LOC_Os10g02610NANA10+982312..983598hypothetical protein
LOC_Os10g02620Os.23269.1.S1_s_at11/1110+984233..987054GAGA binding protein-like family protein, expressed
LOC_Os10g02620Os.23269.1.S1_x_at11/1110+984233..987054GAGA binding protein-like family protein, expressed
LOC_Os10g02620Os.20496.2.S1_a_at1/1110+984233..987054GAGA binding protein-like family protein, expressed
LOC_Os10g02630Os.4669.3.S1_x_at11/1110+991798..997065transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g02630Os.4669.1.S1_a_at11/1110+991798..997065transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g02640OsAffx.18924.1.S1_at11/1110+1003645..1006125hypothetical protein
LOC_Os10g02640OsAffx.18924.2.S1_x_at3/1110+1003645..1006125hypothetical protein
LOC_Os10g02644NANA10+1007594..1007803hypothetical protein
LOC_Os10g02650OsAffx.20792.1.S1_at11/1110+1018079..1021742hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4669.1.S1_a_at--907--9111Chr10:992099..992222 (25 bp)
TGCTGCACTGCTTGAACGGTTGTTC
LOC_Os10g02630
Os.4669.1.S1_a_at--275--3971Chr10:992083..992107 (25 bp)
CGGTTGTTCTAGGTGCTCGTCATTG
LOC_Os10g02630
Os.4669.1.S1_a_at--748--1531Chr10:992041..992065 (25 bp)
AGCATGTTTACTTGTTGCCTGGCGC
LOC_Os10g02630
Os.4669.1.S1_a_at--217--1591Chr10:992013..992037 (25 bp)
AGCTCTGCCGCTTTGCAAGGCTGGA
LOC_Os10g02630
Os.4669.1.S1_a_at--667--5171Chr10:991999..992023 (25 bp)
GCAAGGCTGGATATGTAATACCGGT
LOC_Os10g02630
Os.4669.1.S1_a_at--1034--3091Chr10:991983..992007 (25 bp)
AATACCGGTGTTACTGTCTGTTGTT
LOC_Os10g02630
Os.4669.1.S1_a_at--153--1971Chr10:991971..991995 (25 bp)
ACTGTCTGTTGTTCCTTTTGTGGTT
LOC_Os10g02630
Os.4669.1.S1_a_at--1133--10491Chr10:991940..991964 (25 bp)
TTAAGATGTTTTTGCACTTCCCTGC
LOC_Os10g02630
Os.4669.1.S1_a_at--72--2071Chr10:991925..991949 (25 bp)
ACTTCCCTGCTTTTGTATTGTATGA
LOC_Os10g02630
Os.4669.1.S1_a_at--676--6911Chr10:991906..991930 (25 bp)
GTATGAGACGCTAGAACTTGTTTTG
LOC_Os10g02630
Os.4669.1.S1_a_at--988--431Chr10:991876..991900 (25 bp)
ATCTTTTGCTTCAGTACTCTGTTCA
LOC_Os10g02630
Target Sequence 
TGCTGCACTGCTTGAACGGTTGTTCTAGGTGCTCGTCATTGTTGCCAAAAGAGGCAGAAGCATGTTTACTTGTTGCCTGG
CGCTTGAGCTCTGCCGCTTTGCAAGGCTGGATATGTAATACCGGTGTTACTGTCTGTTGTTCCTTTTGTGGTTTGGGAGT
TAAGATGTTTTTGCACTTCCCTGCTTTTGTATTGTATGAGACGCTAGAACTTGTTTTGGATTCATCTTTTGCTTCAGTAC
TCTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4669.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis