Browse Element(s) Details


Os.20496.2.S1_a_at

Description gb:AY569035.1
DB_XREF= gi:45738201
TID=Os.20496.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20496 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) barley B recombinant like-protein A mRNA, complete cds.
PROD=barley B recombinant like-protein A
FL= gb:AY569035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0250911/11GAGA binding protein-like family protein, expressed
LOC_Os10g025848/11GAGA binding protein-like family protein
LOC_Os10g026201/11GAGA binding protein-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02480Os.55053.1.S1_at11/1110+895717..901058NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02480Os.3985.1.S1_at10/1110+895717..901058NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02490Os.46569.1.S1_at11/1110+908055..910612NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02500OsAffx.30244.1.S1_x_at11/1110+910835..914167Serine/threonine-protein kinase BRI1-like 2 precursor, putative
LOC_Os10g02500OsAffx.30244.1.S1_at11/1110+910835..914167Serine/threonine-protein kinase BRI1-like 2 precursor, putative
LOC_Os10g02509Os.20496.2.S1_a_at11/1110+923231..925262GAGA binding protein-like family protein, expressed
LOC_Os10g02509Os.23269.1.S1_s_at11/1110+923231..925262GAGA binding protein-like family protein, expressed
LOC_Os10g02509Os.23269.1.S1_x_at2/1110+923231..925262GAGA binding protein-like family protein, expressed
LOC_Os10g02520Os.14919.1.S1_at1/1110+931739..935463transposon protein, putative, Mutator sub-class
LOC_Os10g02520Os.56216.1.S1_at1/1110+931739..935463transposon protein, putative, Mutator sub-class
LOC_Os10g02530OsAffx.20794.1.S1_at11/1110+943511..944104hypothetical protein
LOC_Os10g02544OsAffx.22699.1.S1_x_at2/1110+944462..949662retrotransposon protein, putative, unclassified
LOC_Os10g02560NANA10+950042..953245hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20496.2.S1_a_at--715--10232Chr10:961222..961246 (25 bp)
TTTGGACCTCTCAAGGATACCAACG
LOC_Os10g02584
Os.20496.2.S1_a_at--391--192Chr10:961206..961230 (25 bp)
ATACCAACGCCCATTTGTTCTTGCA
LOC_Os10g02584
Os.20496.2.S1_a_at--162--3592Chr10:961195..961219 (25 bp)
CATTTGTTCTTGCACGGGCGCACCA
LOC_Os10g02584
Os.20496.2.S1_a_at--343--8392Chr10:961179..961203 (25 bp)
GGCGCACCACAGCAGTGCTATCGGT
LOC_Os10g02584
Os.20496.2.S1_a_at--25--1812Chr10:961103..961127 (25 bp)
ACCCACTGCCAATGAGTACGAAGCG
LOC_Os10g02584
Os.20496.2.S1_a_at--706--2972Chr10:961093..961117 (25 bp)
AATGAGTACGAAGCGCCGTGGTGCA
LOC_Os10g02584
Os.20496.2.S1_a_at--180--2332Chr10:961029..961053 (25 bp)
AAAGTACTTGAGAAGCTTGCTGGTG
LOC_Os10g02584
Os.20496.2.S1_a_at--57--4932Chr10:961015..961039 (25 bp)
GCTTGCTGGTGAAGGTTATAATCTT
LOC_Os10g02584
Os.20496.2.S1_a_at--1096--4792Chr10:960882..960906 (25 bp)
GCTCTGCAGCTGTTTGGTCTGAGTA
NONE
Os.20496.2.S1_a_at--592--9613Chr10:984286..984310 (25 bp)
TCATCTGTGACCTGGGTGCTGACCT
LOC_Os10g02620
Os.20496.2.S1_a_at--98--6912Chr10:960721..960745 (25 bp)
GTATCTTTGTCATTATCTTTACAAG
NONE
Target Sequence 
TTTGGACCTCTCAAGGATACCAACGCCCATTTGTTCTTGCACGGGCGCACCACAGCAGTGCTATCGGTGGGGTGCAGGTG
GTTGGCAATCTGCGTGCTGCACAACCACCATCTCAACGTACCCACTGCCAATGAGTACGAAGCGCCGTGGTGCACGAATC
GCAGGCAGGAAGATGAGCCATGGTGCGTTCAAGAAAGTACTTGAGAAGCTTGCTGGTGAAGGTTATAATCTTAATAATCC
GATTGACCTGAAGACCTTCTGGGCGAAGCATGGAACAAACAAGTTTGTTACCATAAGGTAAAAGACAATGAAATTCTAAA
ATTTGTTGGCTTTGTAGGTTGCTCTGCAGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATTACAAACTGCAGA
ATCCTTTTAGGTGTAGGTTTTAGGCATGTCCTGTCCCTTTGCAGTAGTTTACATGCCTCATCTGTGACCTGGGTGCTGAC
CTGTATGGTGGCTATCTGCATGTATCTTTGTCATTATCTTTACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20496.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis