Browse Element(s) Details


Os.55053.1.S1_at

Description gb:AK107387.1
DB_XREF= gi:32992596
TID=Os.55053.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.55053 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-C08, full insert sequence.
FL= gb:AK107387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0248011/11NADH-dependent oxidoreductase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02420NANA10+868476..871310retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g02430OsAffx.20387.1.S1_x_at1/1110+871563..874153transposon protein, putative, unclassified
LOC_Os10g02440Os.25754.2.S1_x_at3/1110+875109..876592hypothetical protein
LOC_Os10g02440Os.53479.1.S1_x_at1/1110+875109..876592hypothetical protein
LOC_Os10g02450Os.24942.4.A1_at11/1110+879913..880314hypothetical protein
LOC_Os10g02450Os.24942.4.A1_x_at11/1110+879913..880314hypothetical protein
LOC_Os10g02470OsAffx.30243.1.S1_at10/1110+888495..891169aldo/keto reductase, putative
LOC_Os10g02480Os.55053.1.S1_at11/1110+895717..901058NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02480Os.3985.1.S1_at10/1110+895717..901058NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02490Os.46569.1.S1_at11/1110+908055..910612NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os10g02500OsAffx.30244.1.S1_x_at11/1110+910835..914167Serine/threonine-protein kinase BRI1-like 2 precursor, putative
LOC_Os10g02500OsAffx.30244.1.S1_at11/1110+910835..914167Serine/threonine-protein kinase BRI1-like 2 precursor, putative
LOC_Os10g02509Os.20496.2.S1_a_at11/1110+923231..925262GAGA binding protein-like family protein, expressed
LOC_Os10g02509Os.23269.1.S1_s_at11/1110+923231..925262GAGA binding protein-like family protein, expressed
LOC_Os10g02509Os.23269.1.S1_x_at2/1110+923231..925262GAGA binding protein-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55053.1.S1_at--848--6791Chr10:896932..896956 (25 bp)
GTTATTATCTACAACTAACCAAAGT
LOC_Os10g02480
Os.55053.1.S1_at--65--331Chr10:897005..897029 (25 bp)
ATACTAACCGTTATCATTATTGGAG
LOC_Os10g02480
Os.55053.1.S1_at--113--10431Chr10:897015..897039 (25 bp)
TTATCATTATTGGAGGCTGGCGCTA
LOC_Os10g02480
Os.55053.1.S1_at--312--151Chr10:897020..897044 (25 bp)
ATTATTGGAGGCTGGCGCTAATCGC
LOC_Os10g02480
Os.55053.1.S1_at--447--4831Chr10:897036..897060 (25 bp)
GCTAATCGCACCATCCTAATTGGAT
LOC_Os10g02480
Os.55053.1.S1_at--778--7931Chr10:897057..897081 (25 bp)
GGATTAGGCCAATTAGCTACCGATA
LOC_Os10g02480
Os.55053.1.S1_at--673--4851Chr10:897072..897096 (25 bp)
GCTACCGATAAATCAGCACTTGCGT
LOC_Os10g02480
Os.55053.1.S1_at--158--9851Chr10:897080..897104 (25 bp)
TAAATCAGCACTTGCGTGCATGCCC
LOC_Os10g02480
Os.55053.1.S1_at--931--1491Chr10:897086..897110 (25 bp)
AGCACTTGCGTGCATGCCCCGGTGA
LOC_Os10g02480
Os.55053.1.S1_at--206--871Chr10:897158..897182 (25 bp)
ATGGCGGAACCATCACCATCATTGT
LOC_Os10g02480
Os.55053.1.S1_at--206--1551Chr10:897240..897264 (25 bp)
AGCATTTGGCTTGTGTGGTTGATTT
LOC_Os10g02480
Target Sequence 
GTTATTATCTACAACTAACCAAAGTAAACATCTCCGGTAAAAAAGGAAAGTCCCGCAAAAAAGGAAAAAGGAAATACTAA
CCGTTATCATTATTGGAGGCTGGCGCTAATCGCACCATCCTAATTGGATTAGGCCAATTAGCTACCGATAAATCAGCACT
TGCGTGCATGCCCCGGTGACCATCTCGGCATNTGCGCCAATTAGCAAAACCGGCGGTGGTGGTAGGATGGCGGAACCATC
ACCATCATTGTTGTCTNTCTTTTTTAACTAACCAACATTAAAAAAAATAGAGGGTGTATATATGATCAAGCATTTGGCTT
GTGTGGTTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis