Browse Element(s) Details

Os.18659.1.S1_s_at

Description

gb:AK099623.1
DB_XREF= gi:32984832
TID=Os.18659.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013053G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013053G12, full insert sequence.
FL= gb:AK099623.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g56360	11/11	expressed protein
LOC_Os07g28910	11/11	LSD1 zinc finger family protein, expressed
LOC_Os05g51380	1/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g56320	OsAffx.24892.1.S1_x_at	11/11	2	+	34470061..34476909	Glycogen synthase, putative, expressed
LOC_Os02g56330	OsAffx.12662.1.S1_at	3/11	2	+	34477416..34479901	Calcium binding EGF domain containing protein, expressed
LOC_Os02g56340	Os.53293.1.S1_at	11/11	2	+	34482508..34483496	expressed protein
LOC_Os02g56350	OsAffx.12662.1.S1_at	11/11	2	+	34486691..34492248	hAT family dimerisation domain containing protein
LOC_Os02g56350	Os.23305.1.A1_at	1/11	2	+	34486691..34492248	hAT family dimerisation domain containing protein
LOC_Os02g56350	Os.23305.1.A1_x_at	1/11	2	+	34486691..34492248	hAT family dimerisation domain containing protein
LOC_Os02g56360	Os.18659.1.S1_s_at	11/11	2	+	34494718..34498687	expressed protein
LOC_Os02g56360	OsAffx.12663.1.S1_at	11/11	2	+	34494718..34498687	expressed protein
LOC_Os02g56360	Os.51194.1.A1_x_at	7/11	2	+	34494718..34498687	expressed protein
LOC_Os02g56360	OsAffx.11133.1.S1_at	1/11	2	+	34494718..34498687	expressed protein
LOC_Os02g56370	OsAffx.18050.2.S1_at	11/11	2	+	34503842..34506710	wall-associated kinase-like 1, putative, expressed
LOC_Os02g56380	Os.49913.1.S1_at	11/11	2	+	34509263..34513579	Calcium binding EGF domain containing protein
LOC_Os02g56380	OsAffx.24548.1.S1_x_at	1/11	2	+	34509263..34513579	Calcium binding EGF domain containing protein
LOC_Os02g56390	Os.14919.1.S1_at	5/11	2	+	34515833..34521811	transposon protein, putative, Mutator sub-class
LOC_Os02g56390	Os.56216.1.S1_at	1/11	2	+	34515833..34521811	transposon protein, putative, Mutator sub-class
LOC_Os02g56390	OsAffx.29313.1.S1_at	1/11	2	+	34515833..34521811	transposon protein, putative, Mutator sub-class

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Gene Ontology Classification

GO id	Type	Name
GO:0006917	biological_process	induction of apoptosis
GO:0003677	molecular_function	DNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18659.1.S1_s_at--486--685	2	Chr07:16952843..16952867 (25 bp)	GTTTGCTTTTCAGTCTAGGATAGAG	LOC_Os07g28910
Os.18659.1.S1_s_at--194--371	2	Chr07:16952857..16952881 (25 bp)	CTAGGATAGAGATTTACATGTCAAA	LOC_Os07g28910
Os.18659.1.S1_s_at--432--205	2	Chr07:16952892..16952916 (25 bp)	ACTTTTGAAAGTGTAATGCGATGCA	LOC_Os07g28910
Os.18659.1.S1_s_at--225--231	2	Chr07:16952943..16952967 (25 bp)	AAAGGATCCATGTCATTTGCTGTCA	LOC_Os07g28910
Os.18659.1.S1_s_at--443--637	2	Chr07:16952947..16952971 (25 bp)	GATCCATGTCATTTGCTGTCAGAAT	LOC_Os07g28910
Os.18659.1.S1_s_at--1056--911	3	Chr07:16952960..16952984 (25 bp)	TGCTGTCAGAATAGTAATGTTTGTT	LOC_Os07g28910
Os.18659.1.S1_s_at--408--71	2	Chr07:16952976..16953000 (25 bp)	ATGTTTGTTACTTAATGAGGTTTGT	LOC_Os07g28910
Os.18659.1.S1_s_at--90--867	2	Chr07:16952998..16953022 (25 bp)	TGTTACAAACCTTAATTACAGGAAT	LOC_Os07g28910
Os.18659.1.S1_s_at--846--953	2	Chr07:16953037..16953061 (25 bp)	TCTTAACTTTTTACACTCCTATTTG	LOC_Os07g28910
Os.18659.1.S1_s_at--1073--1047	2	Chr07:16953047..16953071 (25 bp)	TTACACTCCTATTTGTAGATGTACA	LOC_Os07g28910
Os.18659.1.S1_s_at--840--703	2	Chr07:16953067..16953091 (25 bp)	GTACAATTATCAGATGGACTATTTT	LOC_Os07g28910

Target Sequence

GTTTGCTTTTCAGTCTAGGATAGAGATTTACATGTCAAAGAGTCAAGTGCACTTTTGAAAGTGTAATGCGATGCAAGTAA
AAACAATTTTGGACAAGATCAAAAGGATCCATGTCATTTGCTGTCAGAATAGTAATGTTTGTTACTTAATGAGGTTTGTT
ACAAACCTTAATTACAGGAATATCATTGTAGTAGTTCTTAACTTTTTACACTCCTATTTGTAGATGTACATATATTTATG
TACAATTATCAGATGGACTATTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis