Browse Element(s) Details


Os.23305.1.A1_x_at

Description gb:CA759196
DB_XREF= gi:25803235
DB_XREF=BR060014B10C09.ab1
CLONE=BR060014B10C09.ab1
TID=Os.23305.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.23305 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T48044 (A.thaliana) T48044 hypothetical protein T12C14.220 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g365505/11hAT family dimerisation domain containing protein
LOC_Os02g563501/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36530Os.56169.1.S1_at11/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36530Os.51655.2.S1_x_at1/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36534Os.51372.1.S1_at11/113+20199243..20199812expressed protein
LOC_Os03g36540Os.22677.2.S1_at11/113+20202305..20204631Magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed
LOC_Os03g36550Os.23305.1.A1_x_at5/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550Os.23305.1.A1_at4/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550OsAffx.524.1.S1_at1/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36560Os.13392.1.S1_at11/113+20218755..20224247Peroxidase 27 precursor, putative, expressed
LOC_Os03g36560OsAffx.25249.1.S1_at2/113+20218755..20224247Peroxidase 27 precursor, putative, expressed
LOC_Os03g36570OsAffx.5954.3.S1_x_at4/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.18275.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.5954.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36570OsAffx.22699.1.S1_x_at1/113+20228979..20238746retrotransposon protein, putative, unclassified
LOC_Os03g36580Os.31845.1.S1_x_at3/113+20239030..20241832hypothetical protein
LOC_Os03g36580Os.31845.1.S1_at3/113+20239030..20241832hypothetical protein
LOC_Os03g36580OsAffx.3761.1.S1_x_at1/113+20239030..20241832hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23305.1.A1_x_at--933--3311Chr03:20213335..20213359 (25 bp)
CACATTCTGGGCAAGGAGAAGCTAG
LOC_Os03g36550
Os.23305.1.A1_x_at--253--1451Chr03:20213351..20213375 (25 bp)
AGAAGCTAGTGGTGTAGGCTCGCCA
LOC_Os03g36550
Os.23305.1.A1_x_at--292--1571Chr03:20213354..20213377 (24 bp)
AGCTAGTGGTGTAGGCTCGCCAGTC
LOC_Os03g36550
Os.23305.1.A1_x_at--427--1091NONE
AGTGGTGTAGGCTCGCCAGTCCTAG
NONE
Os.23305.1.A1_x_at--867--911NONE
AGGCTCGCCAGTCCTAGGCAAAAGA
NONE
Os.23305.1.A1_x_at--725--5851Chr03:20213397..20213421 (25 bp)
GACCAAGAGTTTGCTATTTTCAAGT
LOC_Os03g36550
Os.23305.1.A1_x_at--1080--9711NONE
TCAAGTCAAACCGAACCCGATTATA
NONE
Os.23305.1.A1_x_at--179--1252Chr03:20213492..20213516 (25 bp)
AGATTTCGATGTTTTGGCTTGGTGG
LOC_Os03g36550
Os.23305.1.A1_x_at--235--7991NONE
GGATGAGCATCAAGAGAGTGGAACC
NONE
Os.23305.1.A1_x_at--526--4991Chr03:20214201..20214224 (24 bp)
GCATGTTAAACTAACTATTCGTGTA
NONE
Os.23305.1.A1_x_at--694--2511NONE
AACTATTCGTGTAATATTGGCAAAG
NONE
Target Sequence 
CACATTCTGGGCAAGGAGAAGCTAGTGGTGTAGGCTCGCCAGTCCTAGGCAAAAGAAAACTTGACCAAGAGTTTGCTATT
TTCAAGTCAAACCGAACCCGATTATATAAGTCTGAGATTGAGACATATCTAGAAGAAGTTTGTGAGGATGATAGTAAAGA
TTTCGATGTTTTGGCTTGGTGGAAAAGAAATGCTAAAAGGTTTCCTGTACTGGCAATTATGGCTCGGGATTTTCNAGCAA
TTCCACTCAGCNCTGTGCCTTCGGAATCAGCTTTTAGTTNTGGAGGAAGGATACTTGGAGACNCAAGAAGTTCATTGACN
CCGGATATGCTTGAGGCACTAGTTTGTGCTAAAGATTGGTTATTTAAACCGAAGAAACAAGATCAAAGCNCCTGAGATGG
ATGAGCATCAAGAGAGTGGAACCNCCTTTTTGGTTGTGGGGATAACCNCATCAAGCAATCACATNGGAGGATCATAGCTT
GCNNGCTAACTGATTTGAGCTGCGGAAGTAGCATGCTTNTGCATGTTAAACTAACTATTCGTGTAATATTGGCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23305.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis