Browse Element(s) Details


Os.56169.1.S1_at

Description gb:AK109527.1
DB_XREF= gi:32994736
TID=Os.56169.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B07, full insert sequence.
FL= gb:AK109527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3653011/11FAD-binding domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g36500OsAffx.13199.1.S1_x_at11/113+20171316..20172853hypothetical protein
LOC_Os03g36500OsAffx.20098.1.S1_at1/113+20171316..20172853hypothetical protein
LOC_Os03g36520OsAffx.13200.2.S1_x_at1/113+20176144..20177246hypothetical protein
LOC_Os03g36530Os.56169.1.S1_at11/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36530Os.51655.2.S1_x_at1/113+20194998..20198600FAD-binding domain-containing protein, putative, expressed
LOC_Os03g36534Os.51372.1.S1_at11/113+20199243..20199812expressed protein
LOC_Os03g36540Os.22677.2.S1_at11/113+20202305..20204631Magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed
LOC_Os03g36550Os.23305.1.A1_x_at5/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550Os.23305.1.A1_at4/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36550OsAffx.524.1.S1_at1/113+20208958..20214075hAT family dimerisation domain containing protein
LOC_Os03g36560Os.13392.1.S1_at11/113+20218755..20224247Peroxidase 27 precursor, putative, expressed
LOC_Os03g36560OsAffx.25249.1.S1_at2/113+20218755..20224247Peroxidase 27 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56169.1.S1_at--815--9751Chr03:20198252..20198276 (25 bp)
TAAGTACCCGCGCATCGGCGAGTTC
LOC_Os03g36530
Os.56169.1.S1_at--194--9231Chr03:20198316..20198340 (25 bp)
TCCAGCGACTGGAGCGACATGATGC
LOC_Os03g36530
Os.56169.1.S1_at--95--5671Chr03:20198331..20198355 (25 bp)
GACATGATGCTTGGCATTGGCGGCC
LOC_Os03g36530
Os.56169.1.S1_at--12--1991Chr03:20198422..20198446 (25 bp)
ACTGCGCGCCGGAGCAAGGTTATGT
LOC_Os03g36530
Os.56169.1.S1_at--636--2891Chr03:20198437..20198461 (25 bp)
AAGGTTATGTGTGTCGCCCCGGCAA
LOC_Os03g36530
Os.56169.1.S1_at--728--2911Chr03:20198469..20198493 (25 bp)
AAGGATGCCAGGGTCTGCACCAAGG
LOC_Os03g36530
Os.56169.1.S1_at--629--9011Chr03:20198484..20198508 (25 bp)
TGCACCAAGGTGTAGTCCATGTAGT
LOC_Os03g36530
Os.56169.1.S1_at--1097--1131Chr03:20198497..20198521 (25 bp)
AGTCCATGTAGTTTGATCACGTCGG
LOC_Os03g36530
Os.56169.1.S1_at--534--1891Chr03:20198515..20198539 (25 bp)
ACGTCGGACACACGCTTCAGTGAAT
LOC_Os03g36530
Os.56169.1.S1_at--284--4911Chr03:20198528..20198552 (25 bp)
GCTTCAGTGAATTCTTATGGCGATT
LOC_Os03g36530
Os.56169.1.S1_at--961--10091Chr03:20198543..20198567 (25 bp)
TATGGCGATTAGTTACCGAGCATTC
LOC_Os03g36530
Target Sequence 
TAAGTACCCGCGCATCGGCGAGTTCCTCCGCATCAAGGACGCCTATGACCCCGACGGCCTCTTCTCCAGCGACTGGAGCG
ACATGATGCTTGGCATTGGCGGCCGTGCGCCGACCAGGGACGCGCCGGGTTGCGCGCTGGAGGGGATGTGTGTGTGCTCG
CAGGACGCGCACTGCGCGCCGGAGCAAGGTTATGTGTGTCGCCCCGGCAAGGTGTACAAGGATGCCAGGGTCTGCACCAA
GGTGTAGTCCATGTAGTTTGATCACGTCGGACACACGCTTCAGTGAATTCTTATGGCGATTAGTTACCGAGCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis